FlyBase Gene Report: Dmel\stl

General Information

Symbol

Dmel\stl

Species

D. melanogaster

Name

stall

Annotation Symbol

CG3622

Feature Type

protein_coding_gene

FlyBase ID

FBgn0086408

Gene Model Status

Current

Stock Availability

10 publicly available

Enzyme Name (EC)

Gene Summary

stall (stl) encodes a protein involved in neuron migration inhibition and ovarian follicle development. [Date last reviewed: 2019-08-01] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
Red Book
Interactive Fly

Also Known As

fs(2)A16

Key Links

Genomic Location

Cytogenetic map

59B2-59B2

Sequence location

2R:22,807,860..22,815,993 [+]

Recombination map

2-101

RefSeq locus

NT_033778 REGION:22807860..22815993

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (10 terms)

Molecular Function (3 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

enables metalloendopeptidase activity

inferred from biological aspect of ancestor with PANTHER:PTN000347317

(GO Reference Genome Project, 2011-)

inferred from electronic annotation with InterPro:IPR001590

(InterPro Project Members, 2004-)

inferred from sequence model

(Ozdowski et al., 2009)

enables metallopeptidase activity

inferred from electronic annotation with InterPro:IPR024079

(InterPro Project Members, 2004-)

enables zinc ion binding

inferred from sequence model

(Ozdowski et al., 2009)

Biological Process (6 terms)

Terms Based on Experimental Evidence (4 terms)

CV Term

Evidence

References

involved_in follicle cell of egg chamber development

inferred from mutant phenotype

(Ozdowski et al., 2009)

involved_in follicle cell of egg chamber stalk formation

inferred from mutant phenotype

(Willard et al., 2004)

involved_in negative regulation of neuron migration

inferred from mutant phenotype

(Lhamo and Ismat, 2015)

involved_in oogenesis

inferred from high throughput mutant phenotype

(Schupbach and Wieschaus, 1991)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in extracellular matrix organization

inferred from biological aspect of ancestor with PANTHER:PTN000347317

(GO Reference Genome Project, 2011-)

involved_in proteolysis

inferred from electronic annotation with InterPro:IPR001590

(InterPro Project Members, 2004-)

inferred from biological aspect of ancestor with PANTHER:PTN000347317

(GO Reference Genome Project, 2011-)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

is_active_in extracellular matrix

inferred from biological aspect of ancestor with PANTHER:PTN000347317

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

ADAM WITH THROMBOSPONDIN MOTIF

Protein Family (UniProt)

Protein Signatures (InterPro)

Catalytic Activity (EC/Rhea)

metalloendopeptidase activity

Summaries

Gene Snapshot

stall (stl) encodes a protein involved in neuron migration inhibition and ovarian follicle development. [Date last reviewed: 2019-08-01]

Gene Group (FlyBase)

ADAM WITH THROMBOSPONDIN MOTIF -: A Disintegrin And Metalloprotease Thrombospondin motif (ADAMTS) belongs to the metzincin superfamily of metalloproteases. ADAMTS is related to ADAM proteins, sharing in part their domain organisation. However, ADAMTS includes proteins that contain a variable number of thrombospondin-like repeats instead of disintegrin and cysteine rich domains. ADAMTS proteases are included in MEROPS family M12, subfamily B. (Adapted from FBrf0214506).

Phenotypic Description (Red Book; Lindsley and Zimm 1992)

fs(2)A16

Homozygous females have small (400-600 um long) abnormally organized ovaries. Ultrastructural studies by King and Buckles (1980, DIS 55: 74-75) reveal that oogonial cysts appear to be normal; surrounded by wedge-shaped follicle cells but not separated by interfollicular stalks so that the conventional moniliform vitellarium is not observed. Posterior end of ovariole filled with fusing follicles.

stl: stall (T. Schupbach)

Female-sterile; homozygous females often contain ovarian tumors; ovarioles filled with small undifferentiated cells, as well as egg chambers containing variable numbers of nurse cells and degenerating material. Occasional normal egg chambers take up yolk, but form abnormal, collapsing eggs which remain unfertilized.

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\stl for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9W1Z6)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 5.41

Gene model reviewed during 5.52

Additional transcripts may exist: alternative downstream 5' start sites postulated from RT-PCR data (FBrf0209377) are not annotated as they are not supported by RNA-Seq coverage, CAGE or other data types.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

stl-RC

FBtr0113110

NM_001103953

4051

1136

stl-RE

FBtr0309857

NM_001259540

4559

1136

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

stl-PC

FBpp0112023

128.9

1136

8.26

FBpp0301591

128.9

1136

8.26

Q9W1Z6

NP_001246469

AFH08222

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

1136 aa isoforms: stl-PC, stl-PE

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\stl using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

stl_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

2.43

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

day 5 of adulthood | male -- day 7 of adulthood | male

spermatozoon

(Wasbrough et al., 2010)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\stl in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\stl

View exonic expression by tissue for Dmel\stl

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0086408

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

37619/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0086408

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0086408

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0086408

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3622

Flygut - An atlas of the Drosophila adult midgut

FBgn0086408

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 10 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 4 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of stl

Transgenic constructs containing regulatory region of stl

Aberrations (Deficiencies and Duplications) ( 2 )

Inferred from experimentation ( 2 )

Gene disrupted in

Df(2R)BSC599

(Christensen et al., 2008.9.3)

Df(2R)d02208-f07572

(Ozdowski et al., 2009)

Inferred from location ( 6 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

stl^GD2160

viable, with Scer\GAL4^Mef2.PR

stl^GD2160

viable, with Scer\GAL4^pnr-MD237

stl^GD2160

Sterility

Allele

female sterile

female sterile | recessive

stl^8-1204

Other Phenotypes

Allele

abnormal cell migration | embryonic stage

abnormal cell migration | embryonic stage (with stl²)

stl⁴

abnormal cell migration | embryonic stage (with stl³)

stl⁴

abnormal cell migration | embryonic stage (with stl⁴)

decreased cell number | oogenesis

decreased cell number | oogenesis (with stl³)

stl^8-1204

decreased cell number | oogenesis (with stl^8-1204)

stl³

Phenotype manifest in

Allele

abdominal lch1 neuron | embryonic stage

abdominal lch1 neuron | embryonic stage (with stl²)

stl⁴

abdominal lch1 neuron | embryonic stage (with stl³)

stl⁴

abdominal lch1 neuron | embryonic stage (with stl⁴)

basal stalk

female fusome

stl^unspecified

follicle cell

stl^8-1204

ovariole (with Df(2R)d02208-f07572)

stl^8-1204

ovariole (with stl³)

stl^8-1204

ovariole (with stl^8-1204)

stl³

ovariole | somatic clone

ovary

stl^8-1204

ovary (with stl³)

stl⁴

ovary (with stl⁴)

stl³

spectrosome

stl^unspecified

stalk follicle cell

stalk follicle cell (with stl³)

stl^8-1204

stalk follicle cell (with stl^8-1204)

stl³

stalk follicle cell | P-stage

stl^unspecified

vitellarium

stl^8-1204

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (53)

Hsap\ADAMTS16

4 of 14

Yes

Hsap\ADAMTS18

4 of 14

Yes

3 of 14

3 of 14

3 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

Yes

2 of 14

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (29)

Rnor\Adamts18

3 of 14

Yes

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Mus musculus (laboratory mouse) (31)

Mmus\Adamts6

3 of 14

Yes

Mmus\Adamts10

3 of 14

Yes

Mmus\Adamts16

3 of 14

Yes

Mmus\Adamts18

3 of 14

Yes

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

Yes

Mmus\Adamtsl4

2 of 14

Mmus\Adamtsl5

2 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Mmus\Wfikkn2

1 of 14

Xenopus tropicalis (Western clawed frog) (38)

Xtro\adamts6

2 of 13

Yes

Xtro\adamts16

2 of 13

Yes

Xtro\abo.2

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\traf7

1 of 13

Yes

Xtro\ubxn2a

1 of 13

Xtro\XB990656

1 of 13

Xtro\XB5838589

1 of 13

Danio rerio (Zebrafish) (33)

Drer\adamts18

4 of 14

Yes

Drer\LOC568792

4 of 14

Yes

3 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

Yes

Drer\LOC100001991

2 of 14

Drer\LOC100002059

2 of 14

Drer\si:ch211-267e7.3

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\paplna

1 of 14

Drer\paplnb

1 of 14

Drer\si:dkeyp-73b11.8

1 of 14

Drer\wfikkn2a

1 of 14

Drer\wfikkn2b

1 of 14

Drer\wu:fb59d01

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (13)

Cele\adt-3

10 of 14

Yes

Cele\adt-1

9 of 14

Yes

Cele\adt-2

8 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (13)

Agam\AgaP_AGAP004961

12 of 12

Yes

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:stl. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (11)

AdamTS-A

3 of 13

AdamTS-B

3 of 13

nolo

3 of 13

Ppn

3 of 13

sona

3 of 13

CG31609

1 of 13

Kul

1 of 13

loh

1 of 13

Meltrin

1 of 13

mmd

1 of 13

Tace

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

ADAMTS16; ADAM metallopeptidase with thrombospondin type 1 motif 16

4 of 14

607510

ADAMTS18; ADAM metallopeptidase with thrombospondin type 1 motif 18

4 of 14

607512

MICROCORNEA, MYOPIC CHORIORETINAL ATROPHY, AND TELECANTHUS; MMCAT

ADAMTS6; ADAM metallopeptidase with thrombospondin type 1 motif 6

3 of 14

605008

ADAMTSL4; ADAMTS like 4

3 of 14

610113

THSD4; thrombospondin type 1 domain containing 4

3 of 14

614476

AORTIC ANEURYSM, FAMILIAL THORACIC 12; AAT12

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

63231

DroID - A comprehensive database of gene and protein interactions.

FBgn0086408

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

O-glycosylation of TSR domain-containing proteins

Class of Gene

gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-101

Cytogenetic map

59B2-59B2

Sequence location

2R:22,807,860..22,815,993 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

59B2-59B2

Limits computationally determined from genome sequence between P{PZ}blw⁰³⁹⁷² and P{EP}EP627

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

FlyBase curator comment: Cytological location stated to be 60B8--C5, however this is at odds with mapped genomic location.

(Jones et al., 1999)

Cytological location of stl at 60B8--C5 was reported in FBrf0108820 and was based on the breakpoints of a deficiency that failed to complement stl. However, subsequently the deficiency chromosome was shown to include a second mutation at the (not-deleted) stl locus.

(Ozdowski, 2007.2.26)

Experimentally Determined Recombination Data

Location

2-101

(FlyBase, 2016)

2-105.8

(Comeron et al., 2012)

2-100.5--100.8

(Ozdowski et al., 2009)

2-100.5--101

(Ozdowski, 2007.2.26)

(Bakken, 1973)

2-102

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (10)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

57811

y¹ v¹; P{TRiP.HMJ21819}attP40

35922

y¹ w^*; Mi{MIC}stl^MI03108

43871

y¹ w^*; Mi{MIC}stl^MI05207

77732

y¹ w^*; Mi{Trojan-GAL4.1}stl^{MI03108-TG4.1}

5115

cn¹ stl¹ bw¹ speck¹/CyO, l(2)DTS513¹

Kyoto

108049

cn¹ stl¹ bw¹ speck¹/CyO, l(2)DTS513¹

NIG-Fly

HMJ21819

y¹ v¹; P{TRiP.HMJ21819}attP40/CyO

2RG-1074

y² VhaAC39-1^cho-1 v¹; P{U6-stl.NIG.sgRNA}attP40/CyO

VDRC

v104737

P{KK103774}VIE-260B

v16906

w¹¹¹⁸; P{GD2160}v16906

Genomic Clones (19)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (11)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

GM08694

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0086408

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0086408

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Long-range control of follicle individualisation during oogenesis requires stl gene function in cells outside of the ovary.

(Willard et al., 2004)

The stl locus affects early oogenesis: mutations cause the production of few, defective germ cells.

(Schupbach and Wieschaus, 1991)

Relationship to Other Genes

Source for database merge of

Source for merge of: stl fs(2)A16

(Smith and Cronmiller, 2001)

Source for merge of: stl CG3622

(Ozdowski, 2007.2.26, Ozdowski and Cronmiller, 2007)

Source for merge of: CG3622 BcDNA:GM08694

(FlyBase, 1996-)

Additional comments

Source for merge of CG3622 BcDNA:GM08694 was a shared cDNA ( date:020730 ).

(FlyBase, 1996-)

Nomenclature History

Source for database identify of

Nomenclature comments

Etymology

Synonyms and Secondary IDs (7)

Reported As

Symbol Synonym

BcDNA:GM08694

CG3622

(National Institute of Genetics Fly Stocks, 2022-, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Ozdowski et al., 2009, Ozdowski, 2007.2.26, Ozdowski and Cronmiller, 2007)

Stall

(Ku and Bilder, 2025)

fs(2)A16

(Bakken, 1973)

stl

(Pignataro et al., 2024, Bossen et al., 2023, Rust et al., 2020, Gene Disruption Project members, 2016-, Lhamo and Ismat, 2015, DeSalvo et al., 2014, Kwon et al., 2013, Wasbrough et al., 2010, Ozdowski et al., 2009, Christensen et al., 2008.9.3, Ozdowski, 2007.2.26, Ozdowski and Cronmiller, 2007, Jones et al., 1999)

Name Synonyms

CG3622

Stall

(Kim et al., 2016)

female sterile(2)A16

stall

(Lhamo and Ismat, 2015, Meyer et al., 2011, Ozdowski et al., 2009, Ozdowski, 2007.2.26, Ozdowski and Cronmiller, 2007, Tworoger et al., 1999, Tworoger et al., 1998)

Secondary FlyBase IDs

FBgn0003529
FBgn0034778
FBgn0000946
FBgn0062482

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 48 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

37619

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9W1Z6

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9W1Z6

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0086408

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

37619/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0086408

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0086408

FlyMine - An integrated database for Drosophila genomics

FBgn0086408

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG3622

MARRVEL_MODEL - MARRVEL (model organism gene)

37619

Linkouts

BioGRID - A database of protein and genetic interactions.

63231

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0086408

DroID - A comprehensive database of gene and protein interactions.

FBgn0086408

DRSC - Results frm RNAi screens

FBgn0086408

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

stl_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0086408

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0086408

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3622

Flygut - An atlas of the Drosophila adult midgut

FBgn0086408

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0086408

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

O-glycosylation of TSR domain-containing proteins

References (62)

The following external sites may use different assemblies or annotations than FlyBase.

2.43

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