FB2025_04 , released October 2, 2025
Human Disease Model Report: spinal muscular atrophy, SMN-related
Open Close
General Information
Name
spinal muscular atrophy, SMN-related
FlyBase ID
FBhh0000352
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes spinal muscular atrophy, SMN-related, which encompasses subtypes SMA1-SMA4 of spinal muscular atrophy; SMA1-SMA4 all exhibit autosomal recessive inheritance. The human gene implicated in this disease is SMN1, which encodes a component of SMN complex and plays a role in the assembly of small nuclear ribonucleoproteins (snRNPs) into the spliceosome. Mutations in SMN1 can be partially compensated for by a functional copy of the paralogous gene SMN2. SMN1 is associated with the human diseases spinal muscular atrophy, type I, (MIM:253300, FBhh0000354), spinal muscular atrophy, type II, (MIM:253550, FBhh0000355), spinal muscular atrophy, type III, (MIM:253400, FBhh0000356), and spinal muscular atrophy, type IV, (MIM:271150, FBhh0000357); different subtypes have been observed within the same family, suggesting different manifestations of a single disease variant. There is one identified fly ortholog, Smn, for which RNAi targeting constructs, alleles caused by insertional mutagenesis, and classical amorphic alleles have been generated. Smn is also a high-scoring ortholog for SMN2. SMN2 has been implicated as a modifier of SMA3 and may provide a therapeutic target (see FBhh0001004).

A UAS construct of the wild-type human Hsap\SMN1 gene has been introduced into flies. Overexpression of the human gene using a driver for mesoderm and muscle results in larval lethality; it is postulated that this the result of formation of non-functional heterologous SMN complexes. Hsap\SMN2 has also been introduced into flies; see FBhh0001004.

Amorphic mutations of Dmel\Smn are lethal, usually in the larval stage; larvae exhibit a progressive loss of mobility and neurophysiology defects. A large number of genetic and physical interactions of Dmel\Smn have been described; see below and in the Smn gene report.

Using the fly Smn gene, an extensive collection of constructs carrying variants analogous to those implicated in spinal muscular atrophy (SMA1, SMA2, and SMA3) has been created. Variant(s) implicated in human disease tested (as analogous mutation in fly gene): D20V in the fly Smn gene (corresponds to D44V in the human SMN1 gene, implicated in SMA3); F70S in the fly Smn gene (corresponds to W92S in the human SMN1 gene, implicated in SMA1); V72G in the fly Smn gene (corresponds to V94G in the human SMN1 gene, implicated in SMA2); G73R in the fly Smn gene (corresponds to G95R in the human SMN1 gene, implicated in SMA3); I93F in the fly Smn gene (corresponds to I116F in the human SMN1 gene, implicated in SMA1); Y107C in the fly Smn gene (corresponds to Y130C in the human SMN1 gene, implicated in SMA3); M194R in the fly Smn gene (corresponds to M263R in the human SMN1 gene, implicated in SMA1); G201C in the fly Smn gene (corresponds to G279C in the human SMN1 gene, implicated in SMA2 and SMA3); Y203C in the fly Smn gene (corresponds to Y272C in the human SMN1 gene, implicated primarily in SMA1); T205I in the fly Smn gene (corresponds to T274I in the human SMN1 gene, implicated in SMA2 and SMA3); G206S in the fly Smn gene (corresponds to G275S in the human SMN1 gene, implicated in SMA3); G210V in the fly Smn gene (corresponds to G279V in the human SMN1 gene, implicated in SMA1).

[updated Apr. 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: spinal muscular atrophy
Symptoms and phenotype

Spinal muscular atrophy (SMA) is characterized by progressive muscle weakness resulting from degeneration and loss of the anterior horn cells (i.e., lower motor neurons) in the spinal cord and the brain stem nuclei. Onset ranges from before birth to adolescence or young adulthood. Poor weight gain, sleep difficulties, pneumonia, scoliosis, and joint contractures are common complications. [From GeneReviews, Spinal Muscular Atrophy, pubmed:20301526 2016.07.11]

Specific Disease Summary: spinal muscular atrophy, SMN-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

Survival motor neuron spinal muscular atrophy is characterized by progressive muscle weakness resulting from degeneration and loss of the anterior horn cells (i.e., lower motor neurons) in the spinal cord and the brain stem nuclei. Onset ranges from before birth to adolescence or young adulthood. Poor weight gain, sleep difficulties, pneumonia, scoliosis, and joint contractures are common complications. Prior to identification of the genetic basis of SMA, it was classified into clinical subtypes on the basis of age of onset and maximum function achieved; however, SMA phenotypes associated with mutations in the gene SMN1 span a continuum without a clear delineation of subtypes. These phenotypically defined subtypes include SMA 0 (proposed), with prenatal onset and severe joint contractures, facial diplegia, and respiratory failure; SMA I, with onset before age six months; SMA II, with onset between age six and 12 months; SMA III, with onset in childhood after age 12 months and ability to walk at least 25 meters achieved; and SMA IV, with adult onset. [From GeneReviews, Spinal Muscular Atrophy, pubmed:20301526 2016.07.29]

Spinal muscular atrophy refers to a group of autosomal recessive neuromuscular disorders characterized by degeneration of the anterior horn cells of the spinal cord, leading to symmetrical muscle weakness and atrophy. (Wirth, 2000, pubmed:10679938). Four types of SMA are recognized depending on the age of onset, the maximum muscular activity achieved, and survivorship: type I, severe infantile acute SMA, or Werdnig-Hoffman disease (MIM:253300; FBhh0000354); type II (MIM:253550; FBhh0000355), or infantile chronic SMA; type III (MIM:253400; FBhh0000356), juvenile SMA, or Wohlfart-Kugelberg-Welander disease; and type IV (MIM:271150; FBhh0000357), or adult-onset SMA. All types are caused by recessive mutations in the SMN1 gene. Many groups have observed the occurrence of different SMA subtypes within the same family, suggesting different manifestations of a single disease entity. [From MIM:253300, 2016.08.08]

Genetics

Survival motor neuron spinal muscular atrophy is caused by mutation or deletion in the telomeric copy of the SMN gene, known as SMN1. Changes in expression of the centromeric copy of SMN, SMN2, are known to modify the phenotype. [From MIM:253300, 2016.08.08]

Cellular phenotype and pathology

Muscle biopsies of infantile spinal muscular atrophy demonstrate large numbers of round atrophic fibers and clumps of hypertrophic fibers that are type 1 by the ATPase reaction. Soubrouillard et al. (1995, pubmed:8583219) performed immunohistochemical analyses of biopsied skeletal muscle from 23 cases of infantile SMA to determine the expression of developmentally regulated cytoskeletal components, including desmin (MIM:125660), NCAM (MIM:116930), vimentin (MIM:193060), and embryonic and fetal forms of the myosin heavy chain. Strong NCAM and developmental myosin heavy chain expression was present in atrophic fibers. [From MIM:253300, 2016.08.08]

Molecular information

The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs) into the spliceosome. [Gene Cards, SMN1; 2016.04.16]

The SMN1 and SMN2 genes lie within the telomeric and centromeric halves, respectively, of a large, inverted duplication on chromosome 5q13. These genes share more than 99% nucleotide identity, and both are capable of encoding a 294-amino acid RNA-binding protein, SMN, that is required for efficient assembly of small nuclear ribonucleoprotein (snRNP) complexes. Homozygous loss of the SMN1 gene causes spinal muscular atrophy (SMA; MIM:253300). Absence of SMN1 is partially compensated for by SMN2, which produces enough SMN protein to allow for relatively normal development in cell types other than motor neurons. However, SMN2 cannot fully compensate for loss of SMN1 because, although SMN2 is transcribed at a level comparable to that of SMN1, a large majority of SMN2 transcripts lack exon 7, resulting in production of a truncated, less stable SMN protein (Lefebvre et al., 1995, pubmed:7813012; Kashima et al., 2007, pubmed:17884807). A small proportion of SMN1 associates with polyribosomes and represses translation of target mRNAs (Sanchez et al., 2013, pubmed:23136128). [From MIM:600354, 2016.08.08]

External links
Disease synonyms
SMA
spinal muscular atrophy, SMN1-related
survival motor neuron spinal muscular atrophy
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 2 human to 1 Drosophila.

Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 2 human to 1 Drosophila.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    survival motor neuron (Smn) encodes the eponymous member of the SMN complex, which functions as an assembly chaperone for Sm-class small nuclear ribonucleoproteins. The SMN complex contains three other 'Gemin' proteins encoded by Gem2, Gem3 and rig. Smn is essential for viability but higher levels of the protein are required for proper neuromuscular development and function. [Date last reviewed: 2019-03-14]
    Gene Groups / Pathways
    Comments on ortholog(s)

    Ortholog of human SMN and SMN2 (1 Drosophila to 1 human). Dmel\Smn shares 26% identity and 42% similarity with human SMN1 and 26% identity and 42% similarity with human SMN2.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (31 groups)
      protein-protein
      Interacting group
      Assay
      References
      anti tag coimmunoprecipitation, anti tag western blot, cosedimentation, confirmation by molecular weight, two hybrid
      anti tag coimmunoprecipitation, peptide massfingerprinting, pull down, western blot, anti bait coimmunoprecipitation
      experimental knowledge based
      experimental knowledge based
      experimental knowledge based
      experimental knowledge based
      anti tag coimmunoprecipitation, western blot, Identification by mass spectrometry
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, Identification by mass spectrometry, anti tag western blot, two hybrid, molecular sieving, light scattering, molecular weight estimation by staining, x ray scattering, western blot, experimental knowledge based, cosedimentation, confirmation by molecular weight, x-ray crystallography, electron tomography
      anti bait coimmunoprecipitation, anti tag western blot, anti tag coimmunoprecipitation, western blot, Identification by mass spectrometry, pull down, two hybrid, experimental knowledge based
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, Identification by mass spectrometry, western blot, anti tag western blot
      x-ray crystallography, electron tomography
      anti tag coimmunoprecipitation, western blot
      anti tag coimmunoprecipitation, Identification by mass spectrometry, western blot
      experimental knowledge based
      pull down, autoradiography, anti tag coimmunoprecipitation, anti tag western blot, two hybrid
      anti tag coimmunoprecipitation, anti tag western blot
      anti tag coimmunoprecipitation, western blot, Identification by mass spectrometry
      anti tag coimmunoprecipitation, western blot, anti tag western blot, Identification by mass spectrometry
      anti tag coimmunoprecipitation, anti tag western blot, Identification by mass spectrometry, western blot
      molecular sieving, molecular weight estimation by staining
      molecular sieving, molecular weight estimation by staining
      anti tag coimmunoprecipitation, Identification by mass spectrometry, western blot
      molecular sieving, molecular weight estimation by staining
      molecular sieving, molecular weight estimation by staining
      molecular sieving, molecular weight estimation by staining
      anti bait coimmunoprecipitation, western blot
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      experimental knowledge based
      anti tag coimmunoprecipitation, anti tag western blot
      Alleles Reported to Model Human Disease (Disease Ontology) (44 alleles)
      Models Based on Experimental Evidence ( 39 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 10 )
      Allele
      Disease
      Interaction
      References
      is ameliorated by Atf6c05057
      is exacerbated by ASPPd05779
      is exacerbated by Eip75Bd09801
      is exacerbated by Mad12
      is ameliorated by Moee02369
      is exacerbated by SKd03336
      is exacerbated by btlf02864
      is ameliorated by ctpf02345
      is ameliorated by mlte00818
      is exacerbated by netf04249
      is exacerbated by sprid05295
      is exacerbated by witUAS.cMa
      is exacerbated by witd02492
      Models Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      amorphic allele - molecular evidence
      CRISPR/Cas9
      amorphic allele - genetic evidence
      piggyBac activity
      amorphic allele - molecular evidence
      amorphic allele - genetic evidence
      ethyl methanesulfonate
      amorphic allele - genetic evidence
      amorphic allele - molecular evidence
      P-element activity
      P-element activity
      P-element activity
      References (58)