FlyBase Gene Report: Dmel\ukar

General Information

Symbol

Dmel\ukar

Species

D. melanogaster

Name

ubiquitous kainate receptor

Annotation Symbol

CG11155

Feature Type

protein_coding_gene

FlyBase ID

FBgn0039927

Gene Model Status

Current

Stock Availability

16 publicly available

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

102F8-102F8

Sequence location

4:1,126,602..1,137,919 [+]

Recombination map

4-0

RefSeq locus

NC_004353 REGION:1126602..1137919

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

NCBI

UCSC

Ensembl

Function

Gene Ontology (GO) Annotations (11 terms)

Molecular Function (4 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (4 terms)

CV Term

Evidence

References

enables kainate selective glutamate receptor activity

inferred from sequence or structural similarity

(Littleton and Ganetzky, 2000)

inferred from sequence or structural similarity with UniProtKB:P39086

(Gene Ontology Curators, 2002-)

enables ligand-gated monoatomic ion channel activity

inferred from electronic annotation with InterPro:IPR001320, InterPro:IPR019594

(InterPro Project Members, 2004-)

inferred from biological aspect of ancestor with PANTHER:PTN000437926

(GO Reference Genome Project, 2011-)

enables monoatomic ion channel activity

inferred from electronic annotation with InterPro:IPR001508

(InterPro Project Members, 2004-)

enables signaling receptor activity

inferred from electronic annotation with InterPro:IPR001508

(InterPro Project Members, 2004-)

inferred from biological aspect of ancestor with PANTHER:PTN000437926

(GO Reference Genome Project, 2011-)

Biological Process (4 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

involved_in positive regulation of synaptic plasticity

inferred from mutant phenotype

(Nguyen et al., 2024)

involved_in synaptic transmission, glutamatergic

inferred from mutant phenotype

(Nguyen et al., 2024)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in monoatomic ion transport

inferred from electronic annotation with InterPro:IPR001508

(InterPro Project Members, 2004-)

involved_in regulation of synaptic activity

inferred from sequence or structural similarity with FLYBASE:GluRIIA; FB:FBgn0004620

(Gene Ontology Curators, 2002-)

Cellular Component (3 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

is_active_in postsynaptic membrane

inferred from mutant phenotype

(Nguyen et al., 2024)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

located_in membrane

inferred from electronic annotation with InterPro:IPR001320, InterPro:IPR001508, InterPro:IPR019594

(InterPro Project Members, 2004-)

inferred from electronic annotation with InterPro:IPR001320, InterPro:IPR019594

(InterPro Project Members, 2004-)

is_active_in plasma membrane

inferred from biological aspect of ancestor with PANTHER:PTN000437926

(GO Reference Genome Project, 2011-)

located_in plasma membrane

inferred from sequence or structural similarity with FLYBASE:GluRIIA; FB:FBgn0004620

(Gene Ontology Curators, 2002-)

Gene Group (FlyBase)

UNCLASSIFIED NON-NMDA IONOTROPIC GLUTAMATE RECEPTORS

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

UNCLASSIFIED NON-NMDA IONOTROPIC GLUTAMATE RECEPTORS -: This group comprises ionotropic glutamate receptors which are not selectively activated by NMDA and do not fall into the GluRII sub-type expressed at the neuromuscular junction. (Adapted from FBrf0209026.)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\ukar for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9V4A0)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.46

Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

ukar-RA

FBtr0089195

NM_143684

2979

910

ukar-RB

FBtr0089194

NM_166824

3644

855

ukar-RD

FBtr0333701

NM_166825

4984

910

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

ukar-PA

FBpp0088259

104.4

910

6.78

FBpp0088258

98.5

855

5.96

FBpp0305854

104.4

910

6.78

Q9V4A0

NP_726649

AAN06582

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

910 aa isoforms: ukar-PA, ukar-PD

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\ukar using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG11155_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.78

Transcript Expression

RT-PCR

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

transmedullary neuron Tm5c

(Karuppudurai et al., 2014)

Additional Descriptive Data

Quantitative RT-PCR on single GFP-labeled cells showed a low level of ukar^KK105030 expression in transmedullary neuron Tm5c compared to the transcript level of VGlut1 in these cells.

(Karuppudurai et al., 2014)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

is_active_in postsynaptic membrane

inferred from mutant phenotype

(Nguyen et al., 2024)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\ukar in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\ukar

View exonic expression by tissue for Dmel\ukar

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

43822/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0039927

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0039927

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0039927

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG11155

Flygut - An atlas of the Drosophila adult midgut

FBgn0039927

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 8 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 8 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of ukar

Transgenic constructs containing regulatory region of ukar

Aberrations (Deficiencies and Duplications) ( 1 )

Inferred from experimentation ( 1 )

Gene disrupted in

Df(4)G

(Podemski et al., 2004)

Inferred from location ( 4 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable

viable, with Dcr-2^UAS.cDa, Scer\GAL4^e22c, Scer\GAL4^sqh.PW

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

ukar^GD4652

viable, with Scer\GAL4^Mef2.PR

ukar^GD4652

viable, with Scer\GAL4^pnr-MD237

ukar^GD4652

viable, with Scer\GAL4^tin.CΔ4

ukar^GD4652

Sterility

Allele

female fertile

ukar^D

female fertile (with Df(4)C3)

ukar^D

female fertile (with Df(4)sc^H)

ukar^D

fertile

Other Phenotypes

Allele

abnormal neurophysiology | larval stage

abnormal neurophysiology | larval stage, with Scer\GAL4^BG380

ukar^JF03425

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (21)

Hsap\GRIK1

10 of 14

Yes

Hsap\GRIK3

9 of 14

Hsap\GRIK2

8 of 14

Hsap\GRIK5

8 of 14

Yes

7 of 14

6 of 14

6 of 14

6 of 14

6 of 14

5 of 14

Yes

Hsap\GRID2

4 of 14

Yes

Hsap\GRIN2B

3 of 14

Hsap\GRIN2C

3 of 14

Hsap\GRIN3A

3 of 14

Yes

Hsap\GRIN3B

3 of 14

Yes

2 of 14

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (18)

Rnor\Grik1

9 of 14

Yes

Rnor\Grik2

9 of 14

Yes

Rnor\Grik3

9 of 14

Yes

Rnor\Grik5

9 of 14

Yes

7 of 14

6 of 14

6 of 14

5 of 14

5 of 14

4 of 14

Yes

Rnor\Grid1

3 of 14

Yes

Rnor\Grin2b

3 of 14

Rnor\Grin2c

3 of 14

Rnor\Grin3a

3 of 14

Yes

2 of 14

2 of 14

2 of 14

2 of 14

Yes

Mus musculus (laboratory mouse) (18)

Mmus\Grik1

9 of 14

Yes

Mmus\Grik5

9 of 14

Yes

8 of 14

8 of 14

7 of 14

6 of 14

6 of 14

6 of 14

5 of 14

5 of 14

Yes

Mmus\Grid2

4 of 14

Yes

Mmus\Grin2c

3 of 14

Mmus\Grin3a

3 of 14

Yes

Mmus\Grin3b

3 of 14

Yes

2 of 14

2 of 14

2 of 14

1 of 14

Xenopus tropicalis (Western clawed frog) (30)

Xtro\grik3

6 of 13

Yes

Xtro\grik5

6 of 13

Yes

Xtro\grik1

4 of 13

Xtro\grid2

3 of 13

Yes

Xtro\grik2

3 of 13

Xtro\grik4

3 of 13

Xtro\grik5-like.1

3 of 13

Yes

Xtro\dedd2

2 of 13

Xtro\grid1

2 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\grm5

1 of 13

Xtro\lrfn5

1 of 13

Xtro\lrrn4cl

1 of 13

Yes

Xtro\mettl4

1 of 13

Xtro\serpinb1

1 of 13

Xtro\vtcn1

1 of 13

Yes

Danio rerio (Zebrafish) (33)

Drer\grik1a

9 of 14

Yes

Drer\grik1b

9 of 14

Yes

Drer\LOC100334689

9 of 14

Yes

Drer\grik2

8 of 14

Drer\grik5

8 of 14

Yes

7 of 14

6 of 14

6 of 14

6 of 14

6 of 14

6 of 14

6 of 14

6 of 14

5 of 14

5 of 14

Yes

Drer\grid1b

5 of 14

Yes

Drer\grid2

4 of 14

Yes

Drer\si:ch211-251b21.1

4 of 14

Yes

Drer\si:dkey-183j2.10

4 of 14

Yes

3 of 14

3 of 14

3 of 14

3 of 14

Yes

Drer\grin3ba

3 of 14

Yes

Drer\LOC100331381

3 of 14

Yes

3 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

Yes

Drer\LOC100149482

2 of 14

Drer\grin2ab

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (18)

Cele\glr-5

9 of 14

Yes

Cele\glr-3

8 of 14

Yes

7 of 14

5 of 14

4 of 14

3 of 14

3 of 14

3 of 14

Yes

Cele\nmr-1

2 of 14

Cele\W02A2.5

2 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Cele\T25E4.2

1 of 14

Cele\ZK867.2

1 of 14

Anopheles gambiae (African malaria mosquito) (47)

Agam\AgaP_AGAP000798

5 of 12

Yes

Agam\AgaP_AGAP000803

5 of 12

Yes

Agam\AgaP_AGAP012447

5 of 12

Yes

4 of 12

4 of 12

4 of 12

3 of 12

Yes

3 of 12

3 of 12

3 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (20)

Atha\GLR2

9 of 13

Yes

Atha\GLR3.3

9 of 13

Yes

Atha\GLR3.6

9 of 13

Yes

Atha\GLUR2

9 of 13

Yes

8 of 13

8 of 13

8 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

6 of 13

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:ukar. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (53)

11 of 13

9 of 13

9 of 13

9 of 13

9 of 13

9 of 13

8 of 13

8 of 13

7 of 13

7 of 13

7 of 13

6 of 13

6 of 13

6 of 13

4 of 13

4 of 13

4 of 13

4 of 13

4 of 13

4 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

mtt

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

GRID2; glutamate ionotropic receptor delta type subunit 2

model of autosomal recessive spinocerebellar ataxia 18

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 1 )

Allele

Disease

Interaction

References

ukar^KK105030

ameliorates neurodegenerative disease

modeled by mir-bft^Δ263a-G4, mir-bft²⁴

(Aw et al., 2017)

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

GRIK1; glutamate ionotropic receptor kainate type subunit 1

10 of 14

138245

GRIK3; glutamate ionotropic receptor kainate type subunit 3

9 of 14

138243

GRIK2; glutamate ionotropic receptor kainate type subunit 2

8 of 14

138244

autosomal recessive intellectual developmental disorder 6

GRIK5; glutamate ionotropic receptor kainate type subunit 5

8 of 14

600283

GRIK4; glutamate ionotropic receptor kainate type subunit 4

7 of 14

600282

GRIA1; glutamate ionotropic receptor AMPA type subunit 1

6 of 14

138248

GRIA2; glutamate ionotropic receptor AMPA type subunit 2

6 of 14

138247

NEURODEVELOPMENTAL DISORDER WITH LANGUAGE IMPAIRMENT AND BEHAVIORAL ABNORMALITIES; NEDLIB

GRIA3; glutamate ionotropic receptor AMPA type subunit 3

6 of 14

305915

INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED, SYNDROMIC, WU TYPE; MRXSW

syndromic X-linked intellectual disability 94

GRIA4; glutamate ionotropic receptor AMPA type subunit 4

6 of 14

138246

NEURODEVELOPMENTAL DISORDER WITH OR WITHOUT SEIZURES AND GAIT ABNORMALITIES; NEDSGA

GRID1; glutamate ionotropic receptor delta type subunit 1

5 of 14

610659

GRID2; glutamate ionotropic receptor delta type subunit 2

4 of 14

602368

SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 18; SCAR18

autosomal recessive spinocerebellar ataxia 18

GRIN2B; glutamate ionotropic receptor NMDA type subunit 2B

3 of 14

138252

GRIN2C; glutamate ionotropic receptor NMDA type subunit 2C

3 of 14

138254

GRIN3A; glutamate ionotropic receptor NMDA type subunit 3A

3 of 14

606650

GRIN3B; glutamate ionotropic receptor NMDA type subunit 3B

3 of 14

606651

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0039927

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Class of Gene

gene_with_edited_transcript

(Rodriguez et al., 2012)

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

4-0

Cytogenetic map

102F8-102F8

Sequence location

4:1,126,602..1,137,919 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

102F8-102F8

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

4-0

(FlyBase, 2016)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (16)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

31991

y¹ v¹; P{TRiP.JF03425}attP2

94873

y¹ w¹¹¹⁸; PBac{UAS-ukar.HA}VK00037

94874

y¹ w¹¹¹⁸; PBac{UAS-ukar.HA}VK00033

606087

y¹ w¹¹¹⁸; TI{TI}FRT101F ukar^B

606088

y¹ w¹¹¹⁸; TI{TI}FRT101F ukar^C

Kyoto

118782

y¹ w¹¹¹⁸; PBac{UAS-ukar.HA}VK00037

118783

y¹ w¹¹¹⁸; PBac{UAS-ukar.HA}VK00033

119310

y¹ w¹¹¹⁸; TI{TI}FRT101F ukar^D

11155R-2

v100883

v11963

w¹¹¹⁸; P{GD4652}v11963

v342701

P{hsFLP}1, y1 w1118; P{HD_CFD01256}attP40/CyO-GFP

More stocks available...

Genomic Clones (8)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (60)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

FI01405

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0039927

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0039927

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Relationship to Other Genes

Source for database merge of

Additional comments

Nomenclature History

Source for database identify of

Source for identity of: ukar CG11155

(Nguyen et al., 2024)

Nomenclature comments

Etymology

The gene is named 'ukar' based on it being a kainate receptor with ubiquitous expression.

(Nguyen et al., 2024)

Synonyms and Secondary IDs (6)

Reported As

Symbol Synonym

Name Synonyms

ubiquitous kainate receptor

Secondary FlyBase IDs

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 54 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

43822

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9V4A0

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9V4A0

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

43822/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0039927

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0039927

FlyMine - An integrated database for Drosophila genomics

FBgn0039927

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG11155

MARRVEL_MODEL - MARRVEL (model organism gene)

43822

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0039927

DroID - A comprehensive database of gene and protein interactions.

FBgn0039927

DRSC - Results frm RNAi screens

FBgn0039927

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG11155_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0039927

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0039927

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG11155

Flygut - An atlas of the Drosophila adult midgut

FBgn0039927

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0039927

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC032415

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

References (54)

The following external sites may use different assemblies or annotations than FlyBase.

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