FlyBase Gene Report: Dmel\psidin

FB2026_01 , released March 12, 2026

FB2026_01 , released March 12, 2026

Gene: Dmel\psidin

General Information

Symbol

Dmel\psidin

Species

D. melanogaster

Name

phagocyte signaling impaired

Annotation Symbol

CG4845

Feature Type

protein_coding_gene

FlyBase ID

FBgn0243511

Gene Model Status

Stock Availability

10 publicly available

Gene Summary

Non-catalytic subunit of the NatB complex which catalyzes acetylation of the N-terminal methionine residues of proteins beginning with Met-Asp or Met-Glu (By similarity). Has 2 roles in the larval immune response: required both for the phagocytic degradation of internalized bacteria and for the induction of Defensin in the fat body. Within the phagocytic blood cells, has a role in detection of infection and activation of the humoral immune response. (UniProt, Q9VDQ7)

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
UniProtKB
Interactive Fly

Also Known As

dNAA25, ird16

Key Links

Genomic Location

Cytogenetic map

Sequence location

3R:20,021,704..20,026,482 [+]

Recombination map

3-67

RefSeq locus

NT_033777 REGION:20021704..20026482

Sequence

Get Decorated FASTA

Genomic Maps

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (16 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

enables actin filament binding

inferred from direct assay

(Stephan et al., 2012)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

enables acetyltransferase activator activity

inferred from biological aspect of ancestor with PANTHER:PTN000511059

(GO Reference Genome Project, 2011-)

Biological Process (9 terms)

Terms Based on Experimental Evidence (8 terms)

CV Term

Evidence

References

involved_in actin filament depolymerization

inferred from genetic interaction with FLYBASE:tsr; FB:FBgn0011726

(Stephan et al., 2012)

involved_in activation of immune response

inferred from mutant phenotype

(Brennan et al., 2007)

involved_in border follicle cell migration

inferred from mutant phenotype

(Kim et al., 2011)

involved_in immune response

inferred from mutant phenotype

(Brennan et al., 2007)

involved_in negative regulation of neuron apoptotic process

inferred from mutant phenotype

(Stephan et al., 2012)

inferred from genetic interaction with FLYBASE:tsr; FB:FBgn0011726

(Stephan et al., 2012)

involved_in phagocytosis, engulfment

inferred from mutant phenotype

(Brennan et al., 2007)

involved_in positive regulation of lamellipodium assembly

inferred from mutant phenotype

(Stephan et al., 2012)

involved_in sensory neuron axon guidance

inferred from mutant phenotype

(Stephan et al., 2012)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in cytoskeleton organization

inferred from biological aspect of ancestor with PANTHER:PTN000511060

(GO Reference Genome Project, 2011-)

Cellular Component (5 terms)

Terms Based on Experimental Evidence (5 terms)

CV Term

Evidence

References

located_in cytoplasm

inferred from direct assay

(Kim et al., 2011)

located_in growth cone lamellipodium

inferred from direct assay

(Stephan et al., 2012)

located_in lysosome

inferred from direct assay

(Brennan et al., 2007)

part_of NatB complex

inferred from physical interaction with FLYBASE:Naa20A; FB:FBgn0031043

(Stephan et al., 2012)

located_in neuron projection

inferred from direct assay

(Stephan et al., 2012)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

is_active_in cytoplasm

inferred from biological aspect of ancestor with PANTHER:PTN000511059

(GO Reference Genome Project, 2011-)

part_of NatB complex

inferred from biological aspect of ancestor with PANTHER:PTN000511060

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

N-TERMINAL ACETYLTRANSFERASE AUXILIARY SUBUNITS

N-TERMINAL ACETYLTRANSFERASE B COMPLEX

Protein Family (UniProt)

Belongs to the MDM20/NAA25 family. (Q9VDQ7)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

N-TERMINAL ACETYLTRANSFERASE AUXILIARY SUBUNITS -: N-terminal acetyltransferase auxiliary subunits interact with their respective catalytic subunits and are required for N-terminal acetyltransferase activity. (Adapted from PMID:12890471)
N-TERMINAL ACETYLTRANSFERASE B COMPLEX -: The N-terminal acetyltransferase B (NatB) complex catalyzes the acetylation of the N-terminal methionine of polypeptides with Met-Asp-, Met-Glu-, Met-Asn- or Met-Gln- N termini. (Adapted from PMID:19660096, PMID:22405572 and FBrf0234437).

Protein Function (UniProtKB)

Non-catalytic subunit of the NatB complex which catalyzes acetylation of the N-terminal methionine residues of proteins beginning with Met-Asp or Met-Glu (By similarity). Has 2 roles in the larval immune response: required both for the phagocytic degradation of internalized bacteria and for the induction of Defensin in the fat body. Within the phagocytic blood cells, has a role in detection of infection and activation of the humoral immune response.

(UniProt, Q9VDQ7)

Gene Model and Products

Number of Transcripts

1

Number of Unique Polypeptides

1

Please see the JBrowse view of Dmel\psidin for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9VDQ7)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.54

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

FBtr0083829

3509

948

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

FBpp0083238

109.1

948

6.94

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Subunit Structure (UniProtKB)

Component of the N-terminal acetyltransferase B (NatB) complex.

(UniProt, Q9VDQ7)

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\psidin using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

psidin_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

3.37

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

prepupal stage P3

larval brain | ubiquitous

Comment: 6h APF

(Stephan et al., 2012)

eye-antennal disc | intense

Comment: 6h APF

(Stephan et al., 2012)

pupal stage P6 -- pharate adult stage P8

brain | faint | ubiquitous

Comment: 24-45h APF

(Stephan et al., 2012)

Comment: 24-45h APF

(Stephan et al., 2012)

Comment: 24-45h APF

(Stephan et al., 2012)

oogenesis stage S9

egg chamber | ubiquitous

(Kim et al., 2011)

border follicle cell

(Kim et al., 2011)

(Kim et al., 2011)

(Kim et al., 2011)

(Kim et al., 2011)

Additional Descriptive Data

psidin transcript is detected ubiquitously. Stronger expression is seen in the eye-antennal disc in prepupal stages and in the antenna and maxillary palps in later stages. In these structures, expression is strongest at 24h APF, decreasing after that.

(Stephan et al., 2012)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

immunolocalization

Stage

Tissue/Position (including subcellular localization)

Reference

prepupal stage P3

eye-antennal disc | intense

Comment: 6h APF

(Stephan et al., 2012)

oogenesis stage S9

egg chamber | ubiquitous

(Kim et al., 2011)

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

• membrane

(Aradska et al., 2015)

day 5 of adulthood | male -- day 7 of adulthood | male

(Wasbrough et al., 2010)

Additional Descriptive Data

psidin protein is detected ubiquitously. Labeled cells partially co-localise with neuronal cells labeled by elav.

(Stephan et al., 2012)

psidin protein is found in all cell types in a stage 9 egg chamber.

(Kim et al., 2011)

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in cytoplasm

inferred from direct assay

(Kim et al., 2011)

located_in growth cone lamellipodium

inferred from direct assay

(Stephan et al., 2012)

located_in lysosome

inferred from direct assay

(Brennan et al., 2007)

part_of NatB complex

inferred from physical interaction with FLYBASE:Naa20A; FB:FBgn0031043

(Stephan et al., 2012)

located_in neuron projection

inferred from direct assay

(Stephan et al., 2012)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\psidin in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\psidin

View exonic expression by tissue for Dmel\psidin

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

42389/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0243511

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0243511

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0243511

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG4845

Flygut - An atlas of the Drosophila adult midgut

FBgn0243511

Images

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 12 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 11 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of psidin

Transgenic constructs containing regulatory region of psidin

Aberrations (Deficiencies and Duplications) ( 1 )

Inferred from experimentation ( 1 )

Gene disrupted in

(Wu et al., 2001)

Inferred from location ( 4 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

cell lethal | adult stage | somatic clone

lethal (with psidin^55D4)

lethal (with psidin^85D1)

lethal (with psidin^e02846)

lethal | recessive

psidin¹

lethal - all die before end of larval stage (with Df(3R)H15)

psidin¹

lethal - all die during P-stage, with Scer\GAL4^Mef2.PR

psidin^GD11446

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

psidin^GD11446

viable, with Scer\GAL4^pnr-MD237

psidin^GD11446

viable, with Scer\GAL4^tin.CΔ4

psidin^GD11446

Sterility

Allele

female fertile, with Scer\GAL4^bam.PU

psidin^GD11446

male fertile, with Scer\GAL4^nanos.PG

psidin^GD11446

male fertile, with Scer\GAL4^NP1624

psidin^GD11446

male sterile, with Scer\GAL4^bam.PU

Other Phenotypes

Allele

abnormal immune response (with Df(3R)H15)

psidin²

abnormal immune response | recessive

psidin¹

abnormal neuroanatomy | adult stage | somatic clone

decreased size | adult stage | somatic clone

increased cell size (with Df(3R)H15)

psidin²

melanotic mass phenotype

psidin¹

some die during third instar larval stage (with Df(3R)H15)

psidin¹

Phenotype manifest in

Allele

adult olfactory receptor neuron Or10a | somatic clone

psidin¹

adult olfactory receptor neuron Or22 | somatic clone

adult olfactory receptor neuron Or33c/85e | somatic clone

adult olfactory receptor neuron Or42a | somatic clone

adult olfactory receptor neuron Or46aA | somatic clone

psidin¹

adult olfactory receptor neuron Or47a | somatic clone

adult olfactory receptor neuron Or47b | somatic clone

psidin¹

adult olfactory receptor neuron Or59c | somatic clone

adult olfactory receptor neuron Or67d | somatic clone

psidin^55D4

adult olfactory receptor neuron Or71a | somatic clone

psidin¹

adult olfactory receptor neuron Or88a | somatic clone

psidin¹

border follicle cell

psidin^55D4

border follicle cell, with Scer\GAL4^slbo.2.6

psidin^UAS.cKa

border follicle cell | somatic clone

embryonic/larval hemocyte (with Df(3R)H15)

psidin¹

eye | somatic clone

hemocyte (with Df(3R)H15)

psidin²

psidin¹

melanotic mass (with Df(3R)H15)

psidin¹

spermatozoon | absent, with Scer\GAL4^bam.PU

psidin^GD11446

waste bag | absent, with Scer\GAL4^bam.PU

psidin^GD11446

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (1)

14 of 14

Yes

Yes

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (1)

14 of 14

Yes

Yes

Mus musculus (laboratory mouse) (1)

13 of 14

Yes

Yes

Xenopus tropicalis (Western clawed frog) (2)

11 of 13

Yes

Yes

1 of 13

No

No

Danio rerio (Zebrafish) (1)

14 of 14

Yes

Yes

Caenorhabditis elegans (Nematode, roundworm) (1)

14 of 14

Yes

Yes

Anopheles gambiae (African malaria mosquito) (1)

Agam\NAA25_ANOGA

12 of 12

Yes

Yes

Arabidopsis thaliana (thale-cress) (1)

10 of 13

Yes

Yes

Saccharomyces cerevisiae (Brewer's yeast) (1)

9 of 13

Yes

Yes

Schizosaccharomyces pombe (Fission yeast) (1)

10 of 12

Yes

Yes

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:psidin. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (1)

2 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 4 )

Allele

Disease

Interaction

References

ameliorates cancer

modeled by Rbf^15aΔ

(Sheng and Du, 2020)

ameliorates cancer

modeled by Rbf^15aΔ

(Sheng and Du, 2020)

modeled by Egfr^2.A887T.UAS, scrib⁶⁷³

(Sheng and Du, 2020)

ameliorates cancer

modeled by Rbf^15aΔ

(Sheng and Du, 2020)

ameliorates cancer

modeled by Rbf^15aΔ

(Sheng and Du, 2020)

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

NAA25; N-alpha-acetyltransferase 25, NatB auxiliary subunit

14 of 14

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

anti tag coimmunoprecipitation, anti tag western blot

(Kim et al., 2011)

psidin - CG15084

experimental knowledge based

(Guruharsha et al., 2011)

psidin - CG15717

experimental knowledge based

(Guruharsha et al., 2011)

experimental knowledge based

(Guruharsha et al., 2011)

psidin - Naa20A

experimental knowledge based, anti tag coimmunoprecipitation, anti tag western blot

(Lasa et al., 2020, Stephan et al., 2012, Guruharsha et al., 2011)

Summary of Genetic Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

suppressible

(Sheng and Du, 2020)

suppressible

(Stephan et al., 2012)

suppressible

(Sheng and Du, 2020)

suppressible

(Sheng and Du, 2020)

suppressible

(Stephan et al., 2012, Kim et al., 2011)

enhanceable

(Stephan et al., 2012)

suppressible

(Stephan et al., 2012)

suppressible

(François et al., 2023)

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

suppressible

(Sheng and Du, 2020)

enhanceable

(Sheng and Du, 2020)

suppressible

(Kim et al., 2011)

External Data

Subunit Structure (UniProtKB)

Component of the N-terminal acetyltransferase B (NatB) complex.

(UniProt, Q9VDQ7 )

Linkouts

BioGRID - A database of protein and genetic interactions.

67375

DroID - A comprehensive database of gene and protein interactions.

FBgn0243511

MIST (genetic) - An integrated Molecular Interaction Database

42389

MIST (protein-protein) - An integrated Molecular Interaction Database

42389

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

3R

Recombination map

3-67

Cytogenetic map

Sequence location

3R:20,021,704..20,026,482 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

92C1-92C1

Limits computationally determined from genome sequence between P{PZ}l(3)10585¹⁰⁵⁸⁵ and P{EP}Synd^EP409

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-67

(FlyBase, 2016)

3-70.1

(Comeron et al., 2012)

3-

(Wu et al., 2001)

Left of (cM)

e

(Wu et al., 2001)

Right of (cM)

sr

(Wu et al., 2001)

Notes

Stocks and Reagents

Stocks (10)

Aberrations including deletions of this gene Aberrations including duplications of this gene

97364

w^* P{UAS-psid.K}1

31828

w¹¹¹⁸; P{EP}psidin^G18616

97365

w^*; P{UASp-psid.K}3/TM3, Sb¹

97363

P{neoFRT}82B psidin² e¹/TM3, Sb¹

41122

P{neoFRT}82B psidin^85D1 e^s/TM3, Sb¹

41123

w¹¹¹⁸; P{neoFRT}82B psidin^55D4 e^s/TM3, Sb¹ Ser¹

104257

w^*; P{GawB}psidin^NP2606 / TM3, Sb¹ Ser¹

112981

w^*; P{GawB}psidin^NP2606 / TM3, Sb¹ Ser¹

v103558

P{KK101104}VIE-260B

v21960

w¹¹¹⁸; P{GD11446}v21960

Genomic Clones (17)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (31)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

AT25164

Other clones

FI24217

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0243511

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0243511

Antibody Information

Laboratory Generated Antibodies

polyclonal

(Kim et al., 2011)

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

psidin regulates olfactory neuron number and axon targeting through two distinct molecular mechanisms. It acts as an actin regulator and antagonist of Tm1 during axon guidance, while it acts as the non-catalytic submit of the N-acetyltransferase complex B to maintain the number of olfactory receptor neurons.

(Stephan et al., 2012)

psidin acts in blood cells, where it plays two roles in the larval immune response: it is required both for the phagocytic degradation of internalised bacteria and for the induction of Def in the fat body.

(Brennan et al., 2007)

Mutants show constitutive activation of the melanization reaction, but are impaired in the induction of antimicrobial gene expression.

(Brennan and Anderson, 2001)

Identification: as a mutation that fails to induce expression of Ecol\lacZ^Dpt.PR normally in response to infection. 1 allele has been obtained.

(Wu et al., 2001)

Relationship to Other Genes

Source for database merge of

Additional comments

Nomenclature History

Source for database identify of

Nomenclature comments

Etymology

Synonyms and Secondary IDs (10)

Reported As

Symbol Synonym

CG4845

(Çiçek et al., 2016, Okuda et al., 2016, Hosono et al., 2015, Kim et al., 2011, Keleman et al., 2009.8.5, Lebo et al., 2009, Brennan et al., 2007)

Naa25

(Rathore et al., 2016)

dNAA25

(François et al., 2023, Lasa et al., 2020)

ird16

(Brennan et al., 2007)

psid

(Kim et al., 2011)

psidin

(Aradska et al., 2015, Luck et al., 2014, Kounatidis and Ligoxygakis, 2012, Stephan et al., 2012, Wasbrough et al., 2010, Charroux and Royet, 2009, Brennan, 2007, Brennan et al., 2007)

psif

(Sheng and Du, 2020)

Name Synonyms

CG4845

N(alpha)-acetyltransferase 25

(Rathore et al., 2016)

immune response deficient 16

(Brennan and Anderson, 2001)

phagocyte signaling impaired

psidin

(Rodal et al., 2015, Vlisidou and Wood, 2015, Kim et al., 2011)

Secondary FlyBase IDs

FBgn0043894
FBgn0038764

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 30 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

42389

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9VDQ7

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

Q9VDQ7

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9VDQ7

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

42389/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0243511

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0243511

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG4845

MARRVEL_MODEL - MARRVEL (model organism gene)

42389

Linkouts

BioGRID - A database of protein and genetic interactions.

67375

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0243511

DroID - A comprehensive database of gene and protein interactions.

FBgn0243511

DRSC - Results frm RNAi screens

FBgn0243511

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

psidin_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0243511

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0243511

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG4845

Flygut - An atlas of the Drosophila adult midgut

FBgn0243511

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC015420

MIST (genetic) - An integrated Molecular Interaction Database

42389

MIST (protein-protein) - An integrated Molecular Interaction Database

42389

References (51)