FB2020_06, released Dec 22, 2020

Gene: Dmel\NC2β

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General Information
Symbol
Dmel\NC2β
Species
D. melanogaster
Name
Negative Cofactor 2β
Annotation Symbol
CG4185
Feature Type
protein_coding_gene
FlyBase ID
FBgn0028926
Gene Model Status
Current
Stock Availability
8 publicly available
Gene Snapshot
Contributions welcome
Other Summaries
Also Known As

BG:DS00929.3 , Dr1, NC2 beta

Key Links
Genomic Location
Cytogenetic map
35B8-35B8
Sequence location
2L:15,007,813..15,008,538 [+]
Recombination map

2-50

RefSeq locus
NT_033779 REGION:15007813..15008538
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (18 terms)
Molecular Function (7 terms)
Terms Based on Experimental Evidence (3 terms)
CV Term
Evidence
References
enables core promoter sequence-specific DNA binding
inferred from direct assay
(Willy et al., 2000)
enables protein binding
inferred from physical interaction with UniProtKB:Q9W2E3
(assigned by UniProt )
(Willy et al., 2000)
enables transcription factor binding
inferred from physical interaction with FLYBASE:NC2α; FB:FBgn0034650
(Willy et al., 2000)
Terms Based on Predictions or Assertions (5 terms)
CV Term
Evidence
References
enables core promoter sequence-specific DNA binding
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
enables protein heterodimerization activity
inferred from electronic annotation with InterPro:IPR009072
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
enables TBP-class protein binding
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
contributes_to transcription coactivator activity
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
enables transcription corepressor activity
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
Biological Process (8 terms)
Terms Based on Experimental Evidence (7 terms)
CV Term
Evidence
References
involved_in chromatin remodeling
inferred from direct assay
(Suganuma et al., 2008)
involved_in histone acetylation
inferred from direct assay
(Suganuma et al., 2008)
involved_in negative regulation of transcription by RNA polymerase II
inferred from mutant phenotype
(Hsu et al., 2008)
inferred from direct assay
(Willy et al., 2000)
involved_in negative regulation of transcription, DNA-templated
inferred from direct assay
(assigned by UniProt )
(Willy et al., 2000)
involved_in nucleosome mobilization
inferred from direct assay
(Suganuma et al., 2008)
involved_in positive regulation of transcription by RNA polymerase II
inferred from direct assay
(Willy et al., 2000)
inferred from mutant phenotype
(Hsu et al., 2008)
involved_in positive regulation of transcription, DNA-templated
inferred from direct assay
(assigned by UniProt )
(Willy et al., 2000)
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
involved_in chromatin remodeling
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
involved_in negative regulation of transcription by RNA polymerase II
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
involved_in positive regulation of transcription by RNA polymerase II
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
involved_in RNA polymerase II preinitiation complex assembly
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (3 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
part_of Ada2/Gcn5/Ada3 transcription activator complex
inferred from direct assay
(Suganuma et al., 2012)
inferred from physical interaction with FLYBASE:Ada2a; FB:FBgn0263738
(Suganuma et al., 2008)
located_in nucleus
inferred from direct assay
(assigned by UniProt )
(Willy et al., 2000)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
part_of Ada2/Gcn5/Ada3 transcription activator complex
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
part_of negative cofactor 2 complex
inferred from biological aspect of ancestor with PANTHER:PTN000115754
(assigned by GO_Central )
(Gaudet et al., 2011)
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the NC2 beta/DR1 family. (Q9VJQ5)
Protein Signatures (InterPro)
Summaries
Gene Group (FlyBase)
ATAC COMPLEX -
The Ada2a-containing (ATAC) complex is a metazoan histone acetyltransferase complex. It positively regulates gene transcription and, although it does not have any intrinsic remodeling activity, facilitates nucleosome sliding of ISWI and SWI-SNF families of chromatin-remodeling complexes. (Adapted from FBrf0204126).
OTHER DNA BINDING DOMAIN TRANSCRIPTION FACTORS -
The Other DNA binding domain transcription factors group is a collection of DNA-binding transcription factors that do not fit into any of the other major domain-based transcription factor groups.
Protein Function (UniProtKB)
Bifunctional basic transcription factor. Activates transcription of DPE (Downstream Promoter Element) containing promoters while repressing transcription of promoters which contain TATA elements (PubMed:11062130). Together with Chrac-14, promotes nucleosome sliding of ATP-dependent nucelosome remodeling complexes (PubMed:18327268).
(UniProt, Q9VJQ5)
Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\NC2β for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Gene model reviewed during 5.45

Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
NC2β-RA
FBtr0080695
NM_135892
726
183
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
NC2β-PA
FBpp0080256
20.9
183
4.31
NP_609736
AAF53428
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Subunit Structure (UniProtKB)

Component of the Ada2a-containing (ATAC) complex composed of at least Ada2a, Atac1, Hcf, Ada3, Gcn5, Mocs2B, Charac-14, Atac3, Atac2, NC2beta and wds (PubMed:18327268). Homodimer (PubMed:18327268). Interacts with NC2-alpha/Drap1 to form the dNC2 complex (PubMed:11062130).

(UniProt, Q9VJQ5)
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
UniProt
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\NC2β using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
Polypeptide Expression
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
part_of Ada2/Gcn5/Ada3 transcription activator complex
inferred from direct assay
(Suganuma et al., 2012)
inferred from physical interaction with FLYBASE:Ada2a; FB:FBgn0263738
(Suganuma et al., 2008)
located_in nucleus
inferred from direct assay
(assigned by UniProt )
(Willy et al., 2000)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\NC2β in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 0 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of NC2β
Transgenic constructs containing regulatory region of NC2β
Deletions and Duplications ( 1 )
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (2)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\DR1
13 of 15
Yes
Yes
Hsap\FGFR3
1 of 15
No
No
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Dr1
13 of 15
Yes
Yes
Rattus norvegicus (Norway rat) (2)
Rnor\LOC100910207
12 of 13
Yes
Yes
Rnor\Dr1
6 of 13
No
Yes
Xenopus tropicalis (Western clawed frog) (1)
Xtro\dr1
10 of 12
Yes
Yes
Danio rerio (Zebrafish) (1)
Drer\dr1
14 of 15
Yes
Yes
Caenorhabditis elegans (Nematode, roundworm) (1)
Cele\dro-1
13 of 15
Yes
Yes
Arabidopsis thaliana (thale-cress) (2)
Atha\NF-YB12
7 of 9
Yes
Yes
Atha\NF-YB13
7 of 9
Yes
Yes
Saccharomyces cerevisiae (Brewer's yeast) (1)
Scer\NCB2
12 of 15
Yes
Yes
Schizosaccharomyces pombe (Fission yeast) (1)
Spom\SPBC30D10.02
11 of 12
Yes
Yes
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG09190IBH )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00000186
Drosophila simulans
Dsim\GD23986
Drosophila sechellia
Dsec\GM15851
Drosophila erecta
Dere\GG25136
Drosophila yakuba
Dyak\GE19055
Drosophila ananassae
Dana\GF14900
Drosophila pseudoobscura pseudoobscura
Dpse\GA18013
Drosophila persimilis
Dper\GL26021
Drosophila willistoni
Dwil\GK18069
Drosophila virilis
Dvir\GJ11838
Drosophila mojavensis
Dmoj\GI13215
Drosophila grimshawi
Dgri\GH10911
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150DP1 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17012692
Glossina morsitans
Tsetse fly
Gmor\GMOY000581
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_05387
Mayetiola destructor
Hessian fly
Mdes\Mdes010272
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL008763
Anopheles darlingi
American malaria mosquito
Adar\ADAC003780
Anopheles gambiae
Malaria mosquito
Agam\AGAP010322
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ009231
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0HHV )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA006192
Danaus plexippus
Monarch butterfly
Dple\DPOGS214145-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL015636
Apis florea
Little honeybee
Aflo\2215879188
Apis mellifera
Western honey bee
Amel\GB40387
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP24053
Bombus terrestris
Buff-tailed bumblebee
Bter\15208312
Linepithema humile
Argentine ant
Lhum\LH14810
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:000950
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG012877
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_08601
Tribolium castaneum
Red flour beetle
Tcas\TC014716
Pediculus humanus
Human body louse
Phum\PHUM323600
Rhodnius prolixus
Kissing bug
Rpro\RPRC002484
Cimex lectularius
Bed bug
Clec\CLEC007735
Cimex lectularius
Bed bug
Clec\CLEC003216
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI002304
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_13444
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0LUS )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR005427
Ixodes scapularis
Black-legged tick
Isca\ISCW005635
Stegodyphus mimosarum
African social velvet spider
Smim\KFM60851.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur02g01190
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_49994
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0ZDR )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Dr1
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000020364
Gallus gallus
Domestic chicken
Ggal\DR1
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (2)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
Nf-YB
1 of 10
tau
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    DR1; down-regulator of transcription 1
    13 of 15
    601482
        Functional Complementation Data
        Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
        Interactions
        Summary of Physical Interactions
        esyN Network Diagram
        Show neighbor-neighbor interactions:
        Select Layout:
        Legend:
        Protein
        RNA
        Selected Interactor(s)
        Interactions Browser
        View in Interactions Browser
        Please see the Physical Interaction reports below for full details
        protein-protein
        Physical Interaction
        Assay
        References
        NC2β - Ada2a
        anti tag coimmunoprecipitation, peptide massfingerprinting, molecular sieving
        (Suganuma et al., 2012, Suganuma et al., 2008)
        NC2β - Atac1
        experimental knowledge based
        (Guruharsha et al., 2011)
        NC2β - Atac2
        anti tag coimmunoprecipitation, molecular sieving, peptide massfingerprinting, experimental knowledge based
        (Suganuma et al., 2012, Guruharsha et al., 2011, Suganuma et al., 2010, Suganuma et al., 2008)
        NC2β - Chrac-14
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        (Guruharsha et al., 2011, Suganuma et al., 2010, Suganuma et al., 2008)
        NC2β - D12
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        (Guruharsha et al., 2011, Suganuma et al., 2010)
        NC2β - Dbx
        two hybrid array
        (Shokri et al., 2019)
        NC2β - Gcn5
        experimental knowledge based
        (Guruharsha et al., 2011)
        NC2β - Hcf
        experimental knowledge based
        (Guruharsha et al., 2011)
        NC2β - Jra
        anti bait coimmunoprecipitation, western blot
        (Suganuma et al., 2010)
        NC2β - MBD-R2
        experimental knowledge based
        (Guruharsha et al., 2011)
        NC2β - Mocs2B
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        (Suganuma et al., 2012, Guruharsha et al., 2011, Suganuma et al., 2010, Suganuma et al., 2008)
        NC2β - NC2α
        bimolecular fluorescence complementation, fluorescence microscopy, two hybrid array, array technology
        (Shokri et al., 2019)
        NC2β - Rel
        two hybrid array
        (Shokri et al., 2019)
        NC2β - Sgf29
        experimental knowledge based
        (Guruharsha et al., 2011)
        NC2β - Taf11
        two hybrid
        (Hu et al., 2017.6.13)
        NC2β - Ubx
        bimolecular fluorescence complementation, fluorescence microscopy
        (Bischof et al., 2018)
        NC2β - da
        two hybrid array
        (Shokri et al., 2019)
        NC2β - h
        two hybrid array
        (Shokri et al., 2019)
        NC2β - msn
        anti bait coimmunoprecipitation, western blot
        (Suganuma et al., 2010)
        NC2β - wds
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Suganuma et al., 2010, Suganuma et al., 2008)
        Summary of Genetic Interactions
        esyN Network Diagram
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        External Data
        Subunit Structure (UniProtKB)
        Component of the Ada2a-containing (ATAC) complex composed of at least Ada2a, Atac1, Hcf, Ada3, Gcn5, Mocs2B, Charac-14, Atac3, Atac2, NC2beta and wds (PubMed:18327268). Homodimer (PubMed:18327268). Interacts with NC2-alpha/Drap1 to form the dNC2 complex (PubMed:11062130).
        (UniProt, Q9VJQ5 )
        Linkouts
        BioGRID - A database of protein and genetic interactions.
        DroID - A comprehensive database of gene and protein interactions.
        InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
        MIST (protein-protein) - An integrated Molecular Interaction Database
        Pathways
        Signaling Pathways (FlyBase)
        Metabolic Pathways
        External Data
        Linkouts
        Genomic Location and Detailed Mapping Data
        Chromosome (arm)
        2L
        Recombination map

        2-50

        Cytogenetic map
        35B8-35B8
        Sequence location
        2L:15,007,813..15,008,538 [+]
        FlyBase Computed Cytological Location
        Cytogenetic map
        Evidence for location
        35B8-35B8
        Limits computationally determined from genome sequence between P{EP}elBEP2039&P{PZ}osprJ571 and P{lacW}Su(H)k07904
        Experimentally Determined Cytological Location
        Cytogenetic map
        Notes
        References
        Experimentally Determined Recombination Data
        Location

        2-50

        (FlyBase, 2016)

        2-47.8

        (Comeron et al., 2012)
        Left of (cM)
        Right of (cM)
        Notes
        Stocks and Reagents
        Stocks (8)
        Genomic Clones (19)
        cDNA Clones (545)
         

        Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

        cDNA clones, fully sequenced
        BDGP DGC clones
        Other clones
          Drosophila Genomics Resource Center cDNA clones

          For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

          cDNA Clones, End Sequenced (ESTs)
          BDGP DGC clones
          Other clones
          RNAi and Array Information
          Linkouts
          DRSC - Results frm RNAi screens
          GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
          Antibody Information
          Laboratory Generated Antibodies
           
          Commercially Available Antibodies
           
          Other Information
          Relationship to Other Genes
          Source for database identify of

          Source for identity of: BG:DS00929.3 CG4185

          (Kodira, 1999.11)

          Source for identity of: BG:DS00929.3 NC2β

          (FlyBase, 1996-)
          Source for database merge of
          Additional comments

          "l(2)35Bc" probably corresponds to either " BG:DS00929.4 " or to " BG:DS00929.3 ".

          (Ashburner et al., 1999)

          " BG:DS00929.3 " may correspond to "l(2)35Be" or "l(2)35Bc".

          (Ashburner et al., 1999.10.12)

          Source for identity of BG:DS00929.3 NC2β was sequence comparison ( date:000225 ).

          (FlyBase, 1996-)
          Other Comments

          Recombinant "NC2" (consisting of both NC2α and NC2β proteins) activates downstream promoter element (DPE)-driven promoters and represses TATA-driven promoters.

          (Willy et al., 2000)
          Origin and Etymology
          Discoverer
          Etymology
          Identification
          External Crossreferences and Linkouts ( 36 )
          Sequence Crossreferences
          NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
          GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
          GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
          Other crossreferences
          BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
          Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
          Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
          Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
          Flygut - An atlas of the Drosophila adult midgut
          GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
          iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
          InterPro - A database of protein families, domains and functional sites
          KEGG Genes - Molecular building blocks of life in the genomic space.
          modMine - A data warehouse for the modENCODE project
          Linkouts
          BioGRID - A database of protein and genetic interactions.
          DroID - A comprehensive database of gene and protein interactions.
          DRSC - Results frm RNAi screens
          FLIGHT - Cell culture data for RNAi and other high-throughput technologies
          FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
          FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
          FlyMine - An integrated database for Drosophila genomics
          InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
          MIST (protein-protein) - An integrated Molecular Interaction Database
          Synonyms and Secondary IDs (11)
          Datasets (0)
          Study focus (0)
          Experimental Role
          Project
          Project Type
          Title
          References (60)