FlyBase Gene Report: Dmel\side-III

General Information

Symbol

Dmel\side-III

Species

D. melanogaster

Name

sidestep III

Annotation Symbol

CG34113

Feature Type

protein_coding_gene

FlyBase ID

FBgn0083949

Gene Model Status

Current

Stock Availability

16 publicly available

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Also Known As

Dm_3R:9314

Key Links

Genomic Location

Cytogenetic map

83C6-83D1

Sequence location

3R:5,862,865..5,959,555 [-]

Recombination map

3-47.5

RefSeq locus

NT_033777 REGION:5862865..5959555

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (0 terms)

Molecular Function (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Biological Process (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Cellular Component (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Gene Group (FlyBase)

SIDE FAMILY

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

SIDE FAMILY -: SIDE is a closely related family encoding immunoglobulin superfamily proteins. They can interact with BEAT family members. Interactions between side and beat-Ia have been shown to play a role in the control of motor axon guidance. (Adapted from FBrf0207934 and FBrf0222007).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\side-III for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q0KIB0)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 5.50

Gene model reviewed during 5.55

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

side-III-RO

FBtr0110806

NM_001043216

8500

1689

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

side-III-PO

FBpp0110103

181.6

1689

5.81

Q0KIB0

NP_001036681

ABI31142

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\side-III using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG34113_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.66

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage

mesoderm

(Li et al., 2017)

presumptive embryonic/larval central nervous system

(Li et al., 2017)

somatic muscle primordium

(Li et al., 2017)

trunk visceral muscle primordium

(Li et al., 2017)

embryonic stage 14

embryonic/larval tracheal section

(Li et al., 2017)

parasegmental furrow

(Li et al., 2017)

Additional Descriptive Data

side-III is initially expressed at high levels in the mesoderm and in muscle primordia. Broad transcription is seen in the developing nervous system. By stage 14 peripheral expression is strongest in developing trachea and in ectodermal stripes along the parasegmental furrows.

(Li et al., 2017)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

day 5 of adulthood | male -- day 7 of adulthood | male

spermatozoon

(Wasbrough et al., 2010)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\side-III in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\side-III

View exonic expression by tissue for Dmel\side-III

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0083949

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

4379844/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0083949

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0083949

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0083949

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG10989

Flygut - An atlas of the Drosophila adult midgut

FBgn0083949

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 11 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 8 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of side-III

Transgenic constructs containing regulatory region of side-III

Aberrations (Deficiencies and Duplications) ( 1 )

Inferred from experimentation ( 1 )

Gene disrupted in

Df(3R)Exel7284

(Ryder, 2004.4.26)

Inferred from location ( 7 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

partially lethal - majority die, with Scer\GAL4^pnr-MD237

side-III^GD8403

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

viable, with Scer\GAL4^Mef2.PR

viable, with Scer\GAL4^pnr-MD237

side-III^GD12854

Other Phenotypes

Allele

some die during pupal stage, with Scer\GAL4^pnr-MD237

side-III^GD8403

visible, with Scer\GAL4^pnr-MD237

side-III^GD8403

Phenotype manifest in

Allele

chaeta | increased number, with Scer\GAL4^pnr-MD237

side-III^GD8403

mesonotum, with Scer\GAL4^pnr-MD237

side-III^GD8403

trichogen cell, with Scer\GAL4^pnr-MD237

side-III^GD8403

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (85)

Hsap\NCAM2

2 of 14

Yes

Hsap\NPHS1

2 of 14

Yes

Hsap\BCAM

1 of 14

Yes

Hsap\BSG

1 of 14

Hsap\BTN1A1

1 of 14

Yes

Hsap\BTN2A1

1 of 14

Yes

Hsap\BTN2A2

1 of 14

Yes

Hsap\BTN2A3P

1 of 14

Yes

Hsap\BTN3A1

1 of 14

Yes

Hsap\BTN3A2

1 of 14

Yes

Hsap\BTN3A3

1 of 14

Yes

Hsap\BTNL2

1 of 14

Yes

Hsap\BTNL3

1 of 14

Yes

Hsap\BTNL8

1 of 14

Yes

Hsap\BTNL9

1 of 14

Yes

Hsap\BTNL10

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\CD200R1

1 of 14

Yes

Hsap\CD200R1L

1 of 14

Yes

Hsap\CD274

1 of 14

Yes

Hsap\CD276

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\FLT1

1 of 14

Hsap\GPA33

1 of 14

Yes

Hsap\HAVCR2

1 of 14

Yes

Hsap\HHLA2

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\IGSF3

1 of 14

Yes

Hsap\IGSF9B

1 of 14

Hsap\IGSF9

1 of 14

Hsap\IGSF11

1 of 14

Yes

Hsap\IGSF21

1 of 14

Yes

Hsap\JAM2

1 of 14

Yes

Hsap\JAM3

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\MDGA1

1 of 14

Hsap\MOG

1 of 14

Yes

Hsap\NCAM1

1 of 14

Hsap\NCR3LG1

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\PTGFRN

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\SIRPB1

1 of 14

Yes

Hsap\SIRPG

1 of 14

Yes

Hsap\TAPBPL

1 of 14

Yes

Hsap\TTN

1 of 14

Hsap\VSIG2

1 of 14

Yes

Hsap\VSTM2A

1 of 14

Yes

Hsap\VSTM2B

1 of 14

Yes

Hsap\VSTM2L

1 of 14

Yes

Hsap\VTCN1

1 of 14

Yes

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (42)

Rnor\Ncam2

2 of 14

Yes

Rnor\Nphs1

2 of 14

Yes

Rnor\Btn1a1

1 of 14

Rnor\Btn2a2

1 of 14

Yes

Rnor\Btnl2

1 of 14

Yes

Rnor\Btnl3

1 of 14

Yes

Rnor\Btnl5

1 of 14

Yes

Rnor\Btnl7

1 of 14

Rnor\Btnl8

1 of 14

Yes

Rnor\Btnl9

1 of 14

Yes

Rnor\Btnl10

1 of 14

Rnor\Cd22

1 of 14

Rnor\Cd200r1l

1 of 14

Yes

Rnor\Cd200r1

1 of 14

Yes

Rnor\Cntn2

1 of 14

Rnor\Cntn6

1 of 14

Rnor\Ermap

1 of 14

Yes

Rnor\Gpa33

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Rnor\Skint1

1 of 14

Yes

Rnor\Skint4

1 of 14

Yes

Rnor\Skint8

1 of 14

Yes

Rnor\Vsig10l2

1 of 14

Yes

Rnor\Vstm2a

1 of 14

Yes

Rnor\Vstm2b

1 of 14

Yes

Rnor\Vstm2l

1 of 14

Yes

Mus musculus (laboratory mouse) (51)

Mmus\Ncam2

2 of 14

Yes

Mmus\Nphs1

2 of 14

Yes

Mmus\Btn1a1

1 of 14

Mmus\Btn2a2

1 of 14

Yes

Mmus\Btnl1

1 of 14

Yes

Mmus\Btnl2

1 of 14

Yes

Mmus\Btnl4

1 of 14

Yes

Mmus\Btnl6

1 of 14

Yes

Mmus\Btnl9

1 of 14

Yes

Mmus\Btnl10

1 of 14

Mmus\Cd22

1 of 14

Mmus\Cd200r1

1 of 14

Yes

Mmus\Cd200r2

1 of 14

Yes

Mmus\Cd200r3

1 of 14

Yes

Mmus\Cd200r4

1 of 14

Yes

Mmus\Cd276

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Mmus\F630003A18Rik

1 of 14

Yes

Mmus\Gm1113

1 of 14

Mmus\Gpa33

1 of 14

Yes

Mmus\Hmcn1

1 of 14

Mmus\Hmcn2

1 of 14

Mmus\Ighm

1 of 14

Yes

Mmus\Igsf9b

1 of 14

Mmus\Igsf9

1 of 14

Mmus\Igsf21

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Mmus\Skint1

1 of 14

Yes

Mmus\Skint2

1 of 14

Yes

Mmus\Skint3

1 of 14

Yes

Mmus\Skint4

1 of 14

Yes

Mmus\Skint5

1 of 14

Yes

Mmus\Skint6

1 of 14

Yes

Mmus\Skint7

1 of 14

Yes

Mmus\Skint8

1 of 14

Yes

Mmus\Ttn

1 of 14

Mmus\Vstm2a

1 of 14

Yes

Mmus\Vstm2b

1 of 14

Yes

Mmus\Vstm2l

1 of 14

Yes

Xenopus tropicalis (Western clawed frog) (37)

Xtro\ncam2

2 of 13

Yes

Xtro\bcam

1 of 13

Xtro\btn2a1

1 of 13

Yes

Xtro\cadm2

1 of 13

Xtro\cd200r1

1 of 13

Yes

Xtro\cd276

1 of 13

Yes

Xtro\clmp

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\igsf9b

1 of 13

Xtro\igsf10

1 of 13

Xtro\jam3

1 of 13

Yes

Xtro\kirrel1

1 of 13

Xtro\LOC100493151

1 of 13

Xtro\LOC100496188

1 of 13

Yes

Xtro\LOC101731191

1 of 13

Yes

Xtro\LOC101732679

1 of 13

Yes

Xtro\LOC101733331

1 of 13

Yes

Xtro\LOC101733623

1 of 13

Xtro\LOC101734363

1 of 13

Yes

Xtro\LOC105945166

1 of 13

Yes

Xtro\lrig1

1 of 13

Xtro\ncam1

1 of 13

Xtro\nectin1l1

1 of 13

Yes

Xtro\nectin1

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\XB5846708

1 of 13

Yes

Xtro\XB22063306

1 of 13

Yes

Danio rerio (Zebrafish) (92)

Drer\ncam1a

2 of 14

Yes

Drer\ncam2

2 of 14

Yes

Drer\nphs1

2 of 14

Yes

Drer\si:ch211-180a12.2

2 of 14

Yes

Drer\zgc:152904

2 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\dhrs13b.2

1 of 14

Yes

Drer\dscama

1 of 14

Drer\esama

1 of 14

Yes

Drer\gpa33a

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\igsf21b

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\LOC100003530

1 of 14

Yes

Drer\LOC100006764

1 of 14

Yes

Drer\LOC100007935

1 of 14

Yes

Drer\LOC100149247

1 of 14

Yes

Drer\LOC100151078

1 of 14

Yes

Drer\LOC100329818

1 of 14

Yes

Drer\LOC100331045

1 of 14

Yes

Drer\LOC100333939

1 of 14

Yes

Drer\LOC100334996

1 of 14

Yes

Drer\LOC100536572

1 of 14

Yes

Drer\LOC100538136

1 of 14

Yes

Drer\LOC101882696

1 of 14

Yes

Drer\LOC101883331

1 of 14

Yes

Drer\LOC101883412

1 of 14

Yes

Drer\LOC101885444

1 of 14

Yes

Drer\LOC101886679

1 of 14

Yes

Drer\LOC101886743

1 of 14

Yes

Drer\LOC101886796

1 of 14

Yes

Drer\LOC103909548

1 of 14

Yes

Drer\LOC108181196

1 of 14

Yes

Drer\LOC108186185

1 of 14

Yes

Drer\LOC108186582

1 of 14

Yes

Drer\LOC110438256

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\si:ch73-44m9.1

1 of 14

Drer\si:ch73-213k20.5

1 of 14

Yes

Drer\si:ch73-256j6.4

1 of 14

Yes

Drer\si:ch73-256j6.6

1 of 14

Yes

Drer\si:ch211-209l18.4

1 of 14

Yes

Drer\si:ch211-214p13.9

1 of 14

Yes

Drer\si:ch211-222f23.6

1 of 14

Drer\si:ch211-274k16.9

1 of 14

Yes

Drer\si:dkey-19a16.4

1 of 14

Yes

Drer\si:dkey-19a16.7

1 of 14

Yes

Drer\si:dkey-19a16.12

1 of 14

Yes

Drer\si:dkey-182g1.10

1 of 14

Yes

Drer\si:dkey-238d18.5

1 of 14

Yes

Drer\si:dkey-253d23.4

1 of 14

Yes

Drer\si:rp71-36a1.5

1 of 14

Yes

Drer\vstm2b

1 of 14

Yes

Drer\vstm2l

1 of 14

Yes

Drer\vtcn1

1 of 14

Yes

Drer\zgc:110852

1 of 14

Yes

Drer\zgc:112965

1 of 14

Yes

Drer\zgc:113298

1 of 14

Yes

Drer\zgc:171497

1 of 14

Yes

Drer\zgc:171500

1 of 14

Yes

Drer\zgc:171686

1 of 14

Yes

Drer\zgc:171887

1 of 14

Yes

Drer\zgc:172133

1 of 14

Yes

Drer\zmp:0000001161

1 of 14

Yes

Caenorhabditis elegans (Nematode, roundworm) (8)

Cele\igcm-1

2 of 14

Yes

Cele\syg-2

2 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (67)

Agam\AgaP_AGAP003305

9 of 12

Yes

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

3 of 12

3 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:side-III. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (62)

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

6 of 13

6 of 13

2 of 13

fred

2 of 13

hbs

2 of 13

nrm

2 of 13

sns

2 of 13

Ama

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Lac

1 of 13

Nrg

1 of 13

otk

1 of 13

plum

1 of 13

Pvr

1 of 13

robo2

1 of 13

robo3

1 of 13

sdk

1 of 13

tutl

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

side-III - beat-Ic

surface plasmon resonance, predetermined participant

(Li et al., 2017)

side-III - side-II

enzyme linked immunosorbent assay

(Ozkan et al., 2013)

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

607073

DroID - A comprehensive database of gene and protein interactions.

FBgn0083949

MIST (protein-protein) - An integrated Molecular Interaction Database

4379844

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-47.5

Cytogenetic map

83C6-83D1

Sequence location

3R:5,862,865..5,959,555 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

83C6-83D1

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-47.5

(FlyBase, 2016)

3-44.1

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (16)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

83076

y¹ v¹; M{WKO.3-H1}ZH-86Fb

24681

w¹¹¹⁸; Mi{ET1}side-III^MB04218

24823

w¹¹¹⁸; Mi{ET1}side-III^MB04817

37034

y¹ w^*; Mi{MIC}side-III^MI02408

37035

y¹ w^*; Mi{MIC}side-III^MI02420

37358

y¹ w^*; Mi{MIC}side-III^MI03649

37756

y¹ w^*; Mi{MIC}side-III^MI01491

10989R-1

14677R-1

14677R-3

v103669

v22742

w¹¹¹⁸; P{GD12854}v22742

More stocks available...

Genomic Clones (60)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (8)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0083949

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0083949

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Relationship to Other Genes

Source for database merge of

Source for merge of: CG10989 CG14677 CG14678

(FlyBase Genome Annotators, 2006)

Additional comments

Annotations CG10989, CG14677 and CG14678 merged as CG34113 in release 5.1 of the genome annotation.

(FlyBase Genome Annotators, 2006)

Nomenclature History

Source for database identify of

Source for identity of: side-III CG34113

(Li et al., 2017)

Nomenclature comments

Etymology

Named 'side-III' based on its phylogenetic relationship to 'side'.

(Li et al., 2017)

Synonyms and Secondary IDs (9)

Reported As

Symbol Synonym

34113

(Ozkan et al., 2013)

CG10989

(Giot et al., 2003)

CG14677

(Lawniczak and Begun, 2004, Vogel et al., 2003)

CG14678

(Vogel et al., 2003)

CG34113

(Meltzer et al., 2019, Peng et al., 2018, Li et al., 2017, Dobson et al., 2015, Gene Disruption Project members, 2015-, Ashwal-Fluss et al., 2014, Fukuoh et al., 2014, Ozkan et al., 2013, Ozkan et al., 2013, Hazelett et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Wasbrough et al., 2010, Keleman et al., 2009.8.5)

CT34460

(Hynes and Zhao, 2000)

Dm_3R:9314

(FlyBase Genome Annotators, 2014, Ladoukakis et al., 2011)

side-III

(Osaka et al., 2024, Corthals et al., 2023, Li et al., 2017)

Name Synonyms

sidestep III

Secondary FlyBase IDs

FBan0014678
FBgn0037392
FBgn0037393
FBgn0037394

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 37 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

4379844

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q0KIB0

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q0KIB0

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0083949

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

4379844/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0083949

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0083949

FlyMine - An integrated database for Drosophila genomics

FBgn0083949

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG34113

MARRVEL_MODEL - MARRVEL (model organism gene)

4379844

Linkouts

BioGRID - A database of protein and genetic interactions.

607073

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0083949

DroID - A comprehensive database of gene and protein interactions.

FBgn0083949

DRSC - Results frm RNAi screens

FBgn0083949

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG34113_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0083949

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0083949

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG10989

Flygut - An atlas of the Drosophila adult midgut

FBgn0083949

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

MIST (protein-protein) - An integrated Molecular Interaction Database

4379844

References (49)

The following external sites may use different assemblies or annotations than FlyBase.

-0.66

Report Sections