FlyBase Gene Report: Dmel\mir-9a

General Information

Symbol

Dmel\mir-9a

Species

D. melanogaster

Name

mir-9a stem loop

Annotation Symbol

CR42891

Feature Type

miRNA_gene

FlyBase ID

FBgn0262373

Gene Model Status

Current

Stock Availability

3 publicly available

Gene Summary

a microRNA that regulates maternal-to-zygotic transition, muscle-tendon attachments, production of sensory bristles and wing development (Interactive Fly, mir-9a )

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Pathway
Interactive Fly

Also Known As

miR-9, dme-miR-9a, miR-9a-5p

Key Links

Genomic Location

Cytogenetic map

76B7-76B7

Sequence location

3L:19,565,131..19,565,208 [+]

Recombination map

3-45

RefSeq locus

NT_037436 REGION:19565131..19565208

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (10 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

enables mRNA 3'-UTR binding

inferred from direct assay

(Katti et al., 2017, Li et al., 2017, Suh et al., 2015, Biryukova et al., 2009)

enables mRNA base-pairing post-transcriptional repressor activity

inferred from direct assay

(Subramanian et al., 2021, Katti et al., 2017, Li et al., 2017, Suh et al., 2015, Biryukova et al., 2009, Kuzin et al., 2007)

Terms Based on Predictions or Assertions (0 terms)

Biological Process (7 terms)

Terms Based on Experimental Evidence (7 terms)

CV Term

Evidence

References

involved_in imaginal disc-derived wing morphogenesis

inferred from genetic interaction with FLYBASE:Bx; FB:FBgn0265598

(Biryukova et al., 2009)

inferred from mutant phenotype

(Bejarano et al., 2010)

involved_in miRNA-mediated gene silencing by mRNA destabilization

inferred from mutant phenotype

(Gallicchio et al., 2022)

inferred from direct assay

(Subramanian et al., 2021)

involved_in miRNA-mediated post-transcriptional gene silencing

inferred from direct assay

(Katti et al., 2017, Li et al., 2017, Suh et al., 2015, Bejarano et al., 2010, Biryukova et al., 2009, Kuzin et al., 2007)

involved_in negative regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria

inferred from direct assay

(Li et al., 2017)

involved_in negative regulation of peptidoglycan recognition protein signaling pathway

inferred from mutant phenotype

(Li et al., 2017)

involved_in regulation of multicellular organism growth

inferred from mutant phenotype

(Suh et al., 2015)

involved_in sensory organ boundary specification

inferred from mutant phenotype

(Li et al., 2006)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in miRNA-mediated post-transcriptional gene silencing

inferred from electronic annotation with Rfam:RF00237

(RNAcentral, 2018-)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

part_of RISC complex

inferred from electronic annotation with Rfam:RF00237

(RNAcentral, 2018-)

Gene Group (FlyBase)

Pathway (FlyBase)

NEGATIVE REGULATORS OF IMD SIGNALING PATHWAY

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Pathway (FlyBase)

NEGATIVE REGULATORS OF IMD SIGNALING PATHWAY -: Negative regulators of the immune deficiency (Imd) pathway result in the decreased activity of the NFκB-like transcription factor Rel in the nucleus. Negative regulators are important in preventing damage to the host from over-activation of the pathway; preventing inappropriate triggering or terminating the response. (Adapted from FBrf0224587 and FBrf0238555.)

Summary (Interactive Fly)

a microRNA that regulates maternal-to-zygotic transition, muscle-tendon attachments, production of sensory bristles and wing development

Interactive Fly

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\mir-9a for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Locations and structures of miRNA models as mapped by miRBase (FBrf0220601).

Conserved: found throughout the Drosophila genus (FBrf0230987).

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

FBtr0304197

FBtr0472710

FBtr0304196

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

miRBase - A searchable database of published miRNA sequences and annotation.

MI0000129

Rfam - A collection of RNA sequence families of structural RNAs including non-coding RNA genes as well as cis-regulatory elements

RF00237

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

AJ421769

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\mir-9a using the Feature Mapper tool.

External Data

Crossreferences

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

NA

Transcript Expression

northern blot

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage -- adult stage

(Sempere et al., 2003)

embryonic stage 5 -- adult stage

organism

Comment: expression starts at 2 hr AEL

(Aravin et al., 2003)

Additional Descriptive Data

Expression is weak, with a broad peak from 6 hours of embryonic development through the first larval instar.

(Aravin et al., 2003)

Northern analysis of 24 microRNAs showed that a number of them were expressed constituitively throughout development.

(Sempere et al., 2003)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\mir-9a in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\mir-9a

View exonic expression by tissue for Dmel\mir-9a

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

12797939/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0262373

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0262373

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 7 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 12 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of mir-9a

Transgenic constructs containing regulatory region of mir-9a

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 7 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal, with Scer\GAL4^Act5C.PU

mir-9a^UAS.cSa

lethal - all die before end of first instar larval stage, with Scer\GAL4^da.PU

mir-9a^{UAS.DsRed(Unk)}

partially lethal (with Df(3L)ED228)

mir-9a^J22

partially lethal | recessive

mir-9a^J22

viable

Sterility

Allele

female fertile

mir-9a^J22

fertile

male fertile

mir-9a^J22

Other Phenotypes

Allele

abnormal neuroanatomy, with Scer\GAL4²²¹

mir-9a^UAS.cLa

decreased body size, with Scer\GAL4^Tub.PU, Scer\GAL80^ts.Ilp2

mir-9a^{sponge.UAS.mCherry}

decreased body size (with mir-9a^E39)

mir-9a^J22

decreased body size (with mir-9a^J22)

mir-9a^E39

decreased cell number, with Scer\GAL4^Ilp2.PR

mir-9a^{UAS.cSa.DsRed2}

decreased cell size, with Scer\GAL4^Ilp2.PR

mir-9a^{UAS.cSa.DsRed2}

flightless, with Scer\GAL4^Hk-UH3

mir-9a^UAS.pLUC

increased body size, with Scer\GAL4^Ilp2.PR

mir-9a^{sponge.UAS.mCherry}

increased cell death | somatic clone

mir-9a^E39

increased cell death | third instar larval stage (with mir-9a^E39)

mir-9a^J22

increased cell death | third instar larval stage (with mir-9a^J22)

mir-9a^E39

increased cell number, with Scer\GAL4^Ilp2.PR

mir-9a^{sponge.UAS.mCherry}

increased cell size, with Scer\GAL4^Ilp2.PR

mir-9a^{sponge.UAS.mCherry}

short lived | male (with Df(3L)ED228)

mir-9a^J22

short lived | male | recessive

mir-9a^J22

some die during first instar larval stage, with Scer\GAL4^da.PU

mir-9a^{UAS.DsRed(Unk)}

visible

visible, with Scer\GAL4^ap-md544

mir-9a^UAS.cLa

visible, with Scer\GAL4^Bx-MS1096

mir-9a^UAS.cBa

visible, with Scer\GAL4^Ilp2.PR

visible, with Scer\GAL4^sca.PU

mir-9a^UAS.DsRed2

visible, with Scer\GAL4^sd-SG29.1

visible, with Scer\GAL4^αTub84B.PL

mir-9a^{sponge.UAS.EGFP}

visible, with Scer\GAL4^αTub84B.PL, mir-9a^J22

mir-9a^{sponge.UAS.EGFP}

visible, with Scer\GAL4^αTub84B.PL, mir-9a^{sponge.UAS.EGFP}

mir-9a^J22

visible (with mir-9a^E39)

mir-9a^J22

visible (with mir-9a^J22)

mir-9a^E39

visible | adult stage, with Scer\GAL4^Hk-UH3

mir-9a^UAS.pLUC

visible | adult stage, with Scer\GAL4^αTub84B.PL

mir-9a^{sponge.UAS.EGFP}

visible | adult stage | recessive

mir-9a^J22

visible | somatic clone

mir-9a^E39

Phenotype manifest in

Allele

abdominal 1 dorsal multidendritic neuron ddaE, with Scer\GAL4²²¹

mir-9a^UAS.cLa

abdominal 1 dorsal multidendritic neuron ddaF, with Scer\GAL4²²¹

mir-9a^UAS.cLa

abdominal dorsal multidendritic neuron ddaE | ectopic

abdominal dorsal multidendritic neuron ddaF | ectopic

anterior crossvein, with Scer\GAL4^Ilp2.PR

mir-9a^{UAS.cSa.DsRed2}

anterior postalar bristle (with mir-9a^E39)

mir-9a^J22

anterior postalar bristle (with mir-9a^J22)

mir-9a^E39

anterior wing margin

anterior wing margin (with mir-9a^E39)

mir-9a^J22

anterior wing margin (with mir-9a^J22)

mir-9a^E39

chaeta, with Scer\GAL4^sca.PU

mir-9a^UAS.DsRed2

dendrite, with Scer\GAL4²²¹

mir-9a^UAS.cLa

dendritic arborizing neuron, with Scer\GAL4²²¹

mir-9a^UAS.cLa

dorsal longitudinal indirect flight muscle cell, with Scer\GAL4^Hk-UH3

mir-9a^UAS.pLUC

dorsocentral bristle (with mir-9a^E39)

mir-9a^J22

dorsocentral bristle (with mir-9a^J22)

mir-9a^E39

eo neuron | ectopic

mir-9a^J22

microchaeta

mir-9a^J22

microchaeta (with mir-9a^E39)

mir-9a^J22

microchaeta (with mir-9a^J22)

mir-9a^E39

myofibril | adult stage, with Scer\GAL4^Hk-UH3

mir-9a^UAS.pLUC

posterior wing margin

posterior wing margin, with Scer\GAL4^αTub84B.PL

mir-9a^{sponge.UAS.EGFP}

posterior wing margin, with Scer\GAL4^αTub84B.PL, mir-9a^J22

mir-9a^{sponge.UAS.EGFP}

posterior wing margin, with Scer\GAL4^αTub84B.PL, mir-9a^{sponge.UAS.EGFP}

mir-9a^J22

posterior wing margin (with mir-9a^E39)

mir-9a^J22

posterior wing margin (with mir-9a^J22)

mir-9a^E39

posterior wing margin | somatic clone

mir-9a^E39

sarcomere | adult stage, with Scer\GAL4^Hk-UH3

mir-9a^UAS.pLUC

scutellar bristle

mir-9a^unspecified

scutellar bristle, with Scer\GAL4^ap-md544

mir-9a^UAS.cLa

scutellar bristle | ectopic

mir-9a^J22

sensory mother cell, with Scer\GAL4^ap-md544

mir-9a^UAS.cLa

sensory mother cell | ectopic

mir-9a^J22

subperineurial glial sheath

mir-9a^J22

tormogen cell | ectopic

mir-9a^J22

trichogen cell | ectopic

mir-9a^J22

triple row of wing sensilla, with Scer\GAL4^sd-SG29.1

mir-9a^{UAS.DsRed(Unk)}

wing, with Scer\GAL4^Bx-MS1096

mir-9a^UAS.cBa

wing, with Scer\GAL4^Hk-UH3

mir-9a^UAS.pLUC

wing, with Scer\GAL4^Ilp2.PR

wing, with Scer\GAL4^sd-SG29.1

wing (with mir-9a^E39)

mir-9a^J22

wing (with mir-9a^J22)

mir-9a^E39

wing disc | somatic clone

mir-9a^E39

wing margin

mir-9a^J22

wing margin, with Scer\GAL4^sd-SG29.1

mir-9a^UAS.pLUC

wing margin | posterior

mir-9a^J22

wing margin | posterior, with Scer\GAL4^αTub84B.PL

mir-9a^{sponge.UAS.EGFP}

wing margin bristle, with Scer\GAL4^sd-SG29.1

mir-9a^{UAS.DsRed(Unk)}

wing margin bristle | ectopic & anterior wing margin

mir-9a^J22

wing pouch (with mir-9a^E39)

mir-9a^J22

wing pouch (with mir-9a^J22)

mir-9a^E39

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (0)

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (0)

Mus musculus (laboratory mouse) (0)

Xenopus tropicalis (Western clawed frog) (0)

Danio rerio (Zebrafish) (0)

Caenorhabditis elegans (Nematode, roundworm) (0)

Anopheles gambiae (African malaria mosquito) (0)

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:mir-9a. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (0)

Human Disease Associations

FlyBase Human Disease Model Reports

myopathy, miR-9-related

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 2 )

Allele

Disease

Interaction

References

mir-9a^{sponge.UAS.mCherry}

ameliorates tauopathy

modeled by Hsap\MAPT^UAS.wt

(Subramanian et al., 2021)

mir-9a^{UAS.cSa.DsRed2}

exacerbates tauopathy

modeled by Hsap\MAPT^UAS.wt

(Subramanian et al., 2021)

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

RNA-RNA

Physical Interaction

Assay

References

mir-9a - Bx

immunohistochemistry, fluorescence technology, necessary binding region, luminiscence technology

(Biryukova et al., 2009)

mir-9a - CG9849

quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

mir-9a - Dg

luminiscence technology, immunohistochemistry, quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

mir-9a - DptA

quantitative reverse transcription pcr, luminiscence technology, necessary binding region

(Li et al., 2017)

mir-9a - SCAR

quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

mir-9a - Ube4A

quantitative reverse transcription pcr

(Subramanian et al., 2021)

mir-9a - drl

quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

mir-9a - htl

quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

mir-9a - mbc

quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

mir-9a - sNPF-R

clip, western blot, pull down, quantitative reverse transcription pcr

(Suh et al., 2015)

mir-9a - sens

immunohistochemistry, pull down, quantitative reverse transcription pcr, luminiscence technology

(Suh et al., 2015, Li et al., 2006)

mir-9a - sls

quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

mir-9a - stan

immunocytochemistry

(Wang et al., 2016)

mir-9a - up

western blot, quantitative reverse transcription pcr

(Katti et al., 2017, Yatsenko and Shcherbata, 2014)

mir-9a - wit

quantitative reverse transcription pcr

(Yatsenko and Shcherbata, 2014)

RNA-protein

Physical Interaction

Assay

References

mir-9a - AGO1

pull down, western blot

(Kakumani et al., 2020)

mir-9a - Unr

pull down, western blot

(Kakumani et al., 2020)

mir-9a - ref(2)P

anti tag coimmunoprecipitation, quantitative reverse transcription pcr

(Ghosh et al., 2024)

Summary of Genetic Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

mir-9a

suppressible

(Bejarano et al., 2010, Biryukova et al., 2009)

mir-9a

suppressible

Diap1

(Bejarano et al., 2010)

mir-9a

suppressible

Mhc

(Katti et al., 2017)

mir-9a

suppressible

sens

(Cassidy et al., 2013, Bejarano et al., 2010, Li et al., 2006)

mir-9a

suppressible

sNPF-R

(Suh et al., 2015)

mir-9a

suppressible

(Katti et al., 2017)

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

suppressible

mir-9a

(Biryukova et al., 2009)

enhanceable

mir-9a

(Biryukova et al., 2009)

enhanceable

mir-9a

(Cassidy et al., 2013)

suppressible

(Li et al., 2006)

suppressible

(Li et al., 2013)

enhanceable

(Li et al., 2013)

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0262373

MIST (genetic) - An integrated Molecular Interaction Database

12797939

Pathways

Signaling Pathways (FlyBase)

NEGATIVE REGULATORS OF IMD SIGNALING PATHWAY

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

miRNA_gene

(FlyBase Genome Annotators, 2010, Lagos-Quintana et al., 2001)

nuclear_gene

(FlyBase Genome Annotators, 2010, Lagos-Quintana et al., 2001)

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-45

Cytogenetic map

76B7-76B7

Sequence location

3L:19,565,131..19,565,208 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

76B7-76B7

Limits computationally determined from genome sequence between P{EP}MESR6^EP3142 and P{lacW}l(3)L3809^L3809

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-45

(FlyBase, 2016)

3-42.8

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (3)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

41138

w¹¹¹⁸; P{UAS-LUC-mir-9a.T}attP2

63789

w^*; P{UAS-DsRed-mir-9a}3/T(2;3)SM6a-TM6B, Tb¹

FlyORF

F002018

M{UAS-mir-9a.S}ZH-86Fb

Genomic Clones (13)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (0)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

mir-9a minimises the phenotypic impact of genomic diversity on determination of sensory cell fate by buffering the level of sens protein.

(Cassidy et al., 2013)

mir-9a ensures the precise specification of sensory organ precursors by down-regulating the expression of sens through its 3' untranslated region.

(Li et al., 2006)

New annotation (CR33063) in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

Relationship to Other Genes

Source for database merge of

Additional comments

The annotation for mir-9a has been changed in release 5.31 of the genome annotation, so that instead of representing a mature miRNA it now represents the precursor stem loop pre-miRNA. The symbol of the annotation has been changed from CR33063 to CR42891 to reflect this change.

(FlyBase Genome Annotators, 2010)

Nomenclature History

Source for database identify of

Source for identity of: mir-9a mir-9

(Stark et al., 2003)

Nomenclature comments

Etymology

Synonyms and Secondary IDs (16)

Reported As

Symbol Synonym

CR33063

(Quinones-Coello, 2007)

CR42891

(FlyBase Genome Annotators, 2010)

MIR-9

(Ylla et al., 2016)

dme-miR-9a

(Volin et al., 2018, Chandra et al., 2017, Dhahbi et al., 2016, Towler et al., 2015, O'Farrell et al., 2008)

dme-miR-9a-5p

(Chandra et al., 2015)

dme-mir-9a

(He et al., 2022, Chen et al., 2013, miRBase, 2013, Huang and Gu, 2007)

miR-9

(Xia and Zhang, 2014, Lucas and Raikhel, 2013, Behura, 2007, Boutla et al., 2003, Enright et al., 2003, Lai et al., 2003, Sempere et al., 2003, Lagos-Quintana et al., 2001, Lee et al., 2001)

miR-9a

(Khoodoruth et al., 2024, Li et al., 2024, Chan et al., 2023, Yang et al., 2023, Gallicchio et al., 2022, Lu and Chtarbanova, 2022, Gallicchio et al., 2021, Ghotbi et al., 2021, Layalle et al., 2021, Vidaurre and Chen, 2021, Donelson et al., 2020, Dubey et al., 2020, Galagali and Kim, 2020, Giri et al., 2020, Kakumani et al., 2020, Rastegari et al., 2020, Toprak et al., 2020, Zhu et al., 2019, Cosacak et al., 2018, Daniel et al., 2018, Chandra et al., 2017, Perry et al., 2017, Nässel and Vanden Broeck, 2016, Wang et al., 2016, Xiong et al., 2016, Mugat et al., 2015, Suh et al., 2015, Fu et al., 2014, Kong et al., 2014, Cassidy et al., 2013, Coolen et al., 2013, Li et al., 2013, Nesler et al., 2013, Liu et al., 2011, Smibert et al., 2011, Yuva-Aydemir et al., 2011, Ghildiyal et al., 2010, Kadener et al., 2009, Loya et al., 2009, Huang et al., 2008, Ibáñez-Ventoso et al., 2008, Xu et al., 2008, Kuzin et al., 2007, Biemar et al., 2006, Biemar et al., 2006, Cohen et al., 2006, Li et al., 2006, Rehwinkel et al., 2006, Venken, 2006, Venken et al., 2006, Leaman, 2005, Leaman et al., 2005, Stark et al., 2005, Lai et al., 2004)

miR-9a-5p

(Gartland et al., 2022, Hotzy et al., 2022)

miR9a

(Berdnik et al., 2008)

mir-9

(Asmar et al., 2007)

mir-9A

(Kuzin et al., 2007)

mir9a

(Giri et al., 2022)

transfrag 22

(Biemar et al., 2006)

Name Synonyms

miR-9

(Westholm et al., 2014)

mir-9a

mir-9a stem loop

Secondary FlyBase IDs

FBgn0067680
FBgn0046813
FBgn0262184

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 18 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

12797939

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AJ421769

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

RNAcentral - A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms

Other crossreferences

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

12797939/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0262373

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0262373

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CR42891

MARRVEL_MODEL - MARRVEL (model organism gene)

12797939

miRBase - A searchable database of published miRNA sequences and annotation.

MI0000129

Rfam - A collection of RNA sequence families of structural RNAs including non-coding RNA genes as well as cis-regulatory elements

RF00237

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0262373

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0262373

Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution

Interactive Fly

MIST (genetic) - An integrated Molecular Interaction Database

12797939

References (127)

The following external sites may use different assemblies or annotations than FlyBase.

NA

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