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FB2026_02
,
released June 18, 2026
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FB2026_02
,
released June 18, 2026
Project: modENCODE_chromatin_proteins_cells
J2G
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General Information
Name
modENCODE_chromatin_proteins_cells
Species
D. melanogaster
Project type
genome binding
FlyBase ID
FBlc0003367
Parent Project
modENCODE_chromatin
Data Provider
Title
Genome-wide localization of chromosomal proteins in cell lines by ChIP-chip and ChIP-Seq.
Accessions
Overview
Description
Project attributes
Biosample type
immortalized cell line
(
modENCODE Data Coordination Center et al., 2012
)
Assay type
ChIP-Seq
(
modENCODE Data Coordination Center et al., 2012
)
DNase-Seq
(
modENCODE Data Coordination Center et al., 2012
)
ChIP-chip
(
modENCODE Data Coordination Center et al., 2012
)
Reagent type
Result type
Key genes
egg
CTCF
BEAF-32
HP4
Su(var)205
mod(mdg4)
Cp190
su(Hw)
(RNAi_target)
Export to HitList
CTCF
BEAF-32
HP4
Su(var)205
mod(mdg4)
Cp190
su(Hw)
E(bx)
Pof
HDAC1
JIL-1
Pc
rhi
msl-1
mof
Su(var)3-7
MBD-R2
Sfmbt
Kdm2
Iswi
SMC3
Psc
Polr2A
Chro
dre4
Trl
blanks
E(z)
Mi-2
Lsd1
ash1
Top2
Sce
mle
MRG15
HP1c
Su(var)3-9
Acf
piwi
dwg
Pcl
HP1b
Set8
pho
Kdm4A
Su(var)2-HP2
wds
(bait_protein)
Export to HitList
GO term(s)
chromatin organization
(
modENCODE Data Coordination Center et al., 2012
)
SO term(s)
Details
Sample preparation
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Parent projects (1)
Export to HitList
Project
Type
Title
modENCODE_chromatin
umbrella project
Umbrella project for modENCODE studies of chromosomal proteins by the Karpen group.
Biosamples generated (188)
Export to HitList
Biosample
Type
Title
BS_mE2650
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE2651
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE2666
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE2667
immortalized cell line
D. melanogaster, CME-W1-Cl.8+ cell line, source for ChIP.
BS_mE2668
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
BS_mE2669
immortalized cell line
D. melanogaster, CME-W1-Cl.8+ cell line, source for ChIP.
BS_mE2670
immortalized cell line
D. melanogaster, Kc167 cell line, source for ChIP.
BS_mE2671
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE2672
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
BS_mE2673
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
Showing 10 / 188 records. Use
Export to HitList
above to see all
Raw data generated (188)
Export to HitList
Assay
Type
Title
ChIP-chip_mE3664_BEAF-32_RNAi_Cp190_ML-DmBG3-c2
ChIP-chip
ChIP-chip of BEAF-32 in D. melanogaster, ML-DmBG3-c2 cell line, Cp190 knockdown.
ChIP-chip_mE3669_Cp190_RNAi_mod(mdg4)_ML-DmBG3-c2
ChIP-chip
ChIP-chip of Cp190 in D. melanogaster, ML-DmBG3-c2 cell line, mod(mdg4) knockdown.
ChIP-chip_mE3670_Cp190_RNAi_su(Hw)_ML-DmBG3-c2
ChIP-chip
ChIP-chip of Cp190 in D. melanogaster, ML-DmBG3-c2 cell line, su(Hw) knockdown.
ChIP-chip_mE3671_CTCF_RNAi_Cp190_ML-DmBG3-c2
ChIP-chip
ChIP-chip of CTCF in D. melanogaster, ML-DmBG3-c2 cell line, Cp190 knockdown.
ChIP-chip_mE3674_CTCF_RNAi_su(Hw)_ML-DmBG3-c2
ChIP-chip
ChIP-chip of CTCF in D. melanogaster, ML-DmBG3-c2 cell line, su(Hw) knockdown.
ChIP-chip_mE3714_su(Hw)_RNAi_Cp190_ML-DmBG3-c2
ChIP-chip
ChIP-chip of su(Hw) in D. melanogaster, ML-DmBG3-c2 cell line, Cp190 knockdown.
ChIP-chip_mE3717_su(Hw)_RNAi_mod(mdg4)_ML-DmBG3-c2
ChIP-chip
ChIP-chip of su(Hw) in D. melanogaster, ML-DmBG3-c2 cell line, mod(mdg4) knockdown.
ChIP-chip_mE3718_su(Hw)_RNAi_su(Hw)_ML-DmBG3-c2
ChIP-chip
ChIP-chip of su(Hw) in D. melanogaster, ML-DmBG3-c2 cell line, su(Hw) knockdown.
ChIP-chip_mE3747_Cp190_RNAi_Cp190_ML-DmBG3-c2
ChIP-chip
ChIP-chip of Cp190 in D. melanogaster, ML-DmBG3-c2 cell line, Cp190 knockdown.
ChIP-chip_mE5147_su(Hw)_RNAi_su(Hw)_S2-DRSC
ChIP-chip
ChIP-chip of su(Hw) in D. melanogaster, S2-DRSC cell line, su(Hw) knockdown.
Showing 10 / 188 records. Use
Export to HitList
above to see all
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
modENCODE_chromatin_proteins_cells
Name Synonyms
Genome-wide localization of chromosomal proteins in cell lines by ChIP-chip and ChIP-Seq.
(
modENCODE Data Coordination Center et al., 2012
)
Secondary FlyBase IDs
References (2)
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Synonyms and Secondary IDs
References