E(var)3-93D, doom, mnm, Mod(mdg4)2.2, Mod(mdg4)67.2
GAGA-like, BTB domain - interacts with suppressor of Hairy wing on gypsy insulator element - a class of insulators required Suppressor of Hairy Wing, Modifier of mdg4 and centrosomal 190 kDa (CP190) proteins to be functional - post-translational modification of insulator proteins by small ubiquitin-like modifier (SUMO) and intact CP190 protein is crucial for insulator body formation
Please see the JBrowse view of Dmel\mod(mdg4) for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.52
1.733 (longest cDNA)
2.2, 1.9, 1.8 (northern blot)
2.3 (northern blot); 1.76 (longest cDNA)
None of the polypeptides share 100% sequence identity.
514 (aa)
610, 524, 520 (aa); 67, 58, 57 (kD predicted)
610, 534 (aa)
The "Doom" variant of mod(mdg4) protein induces apoptosis in insect cells which is inhibited by baculovirus IAP (inhibitor-of-apoptosis). The region of the "Doom" protein required for apoptosis and for binding to baculovirus IAP genes maps to the carboxy-terminal end. Carboxy-terminal amino acids 403-514 are unique to the "Doom" protein and distinguish it from other mod(mdg4) proteins.
Genetic studies showed that mod(mdg4) protein acts through the su(Hw) binding region, either by binding directly to DNA or by interacting with the su(Hw) protein. Purified mod(mdg4) protein was used to distinguish between these possibilites. Results indicate that mod(mdg4) protein does not interact with DNA from the su(Hw)-binding region but does interact with su(Hw) protein.
mod(mdg4) protein is distributed at many sites along the polytene chromosomes including the BXC and ANTC complexes and the white gene. Many of these sites are correlated with less condensed interbands.
encoded by mod1.9
encoded by mod1.8
encoded by mod2.2
fragment of protein B
Can self-associate (PubMed:11350941, PubMed:11416154). Interacts with Chi (PubMed:11416154). Interacts with Top2 (PubMed:21304601). Isoform mod2.2: Component of the gypsy chromatin insulator complex, composed of Cp190, mod(mdg4) and su(Hw) (PubMed:11350941, PubMed:11416154, PubMed:15574329, PubMed:7664338). The gypsy chromatin insulator complex interacts with Topors via mod(mdg4) and su(Hw) (PubMed:16209949). Isoform mod2.2 interacts with Trl/GAGA and interaction with this protein may bypass the repressive effects of the su(Hw) insulator (PubMed:15465920).
Homotypic interactions mediated by the BTB (POZ) domain of this protein may promote the clustering of distant insulator complexes into nuclear insulator bodies.
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\mod(mdg4) using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as ventral nerve cord anlage
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
JBrowse - Visual display of RNA-Seq signals
View Dmel\mod(mdg4) in JBrowse




3-71
3-74.1
3-30.7
3-70.7
Maps within 0.1cM of e.
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
DNA-protein interactions: genome-wide binding profile assayed for mod(mdg4) protein in 0-12 hr embryos. Individual protein-binding experiments listed under "Samples" at GEO: 16245 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16245).
mod(mdg4) has a role in the maintenance of homologous chromosome pairing in meiosis.
Interallelic complementation in the mod(mdg4) gene is a consequence of trans-splicing between two different mutant transcripts, ensuring wild type levels of functional gene product.
Transgene analysis proves mRNA trans-splicing at the mod(mdg4) locus.
The principal 2.2kb transcript of the mod(mdg4) locus appears to be composed of sequences derived from different DNA strands; exons I to IV are derived from one strand, and exons V and VI are derived from sequences on the complementary strand. The genomic organisation of the mod(mdg4) locus suggests that two RNA precursors are transcribed to yield the 2.2kb transcript; a "class I" precursor ("doom") which contains mod(mdg4) exons I to IV (plus another downstream exon), and a "class II" precursor containing mod(mdg4) exons V to VI (this class II precursor is transcribed from the complementary strand to the class I precursor). Trans splicing of the two RNA precursors could produce the 2.2kb transcript (a programmed genomic rearrangement to bring all the coding sequences to the same DNA strand has been ruled out using Southern-blot analysis. It is also possible that a switch to a different template by RNA polymerase II could produce the 2.2kb transcript, although this has never been described. In addition, recombination between precursor RNA molecules could produce the 2.2kb transcript, but this has not been reported in eukaryotes).
The molecular and genetic complexity of mod(mdg4) is underlaid by a large set of individual protein isoforms with specific functions in regulating the chromatin structure of different sets of genes throughout development. In direction of increasing cytology: mod(mdg4)- tin+
A regulatory mutation in mod(mdg4) results in abnormal synapse specificity and synapse morphology.
A stripe expression assay in which the gypsy\su(Hw)BR is inserted between defined enhancers and placed among divergently transcribed reporter genes (w and Ecol\lacZ) containing distinct core promoter sequences has been used to analysed the role of mod(mdg4) in gypsy\su(Hw)BR activity. mod(mdg4) is essential for the enhancer blocking activity of the gypsy\su(Hw)BR. In addition, reductions in mod(mdg4)+ activity cause the gypsy\su(Hw)BR to function as a promoter-specific enhancer that selectively represses w but not the closely linked Ecol\lacZ gene, suggesting that the gypsy\su(Hw)BR does not propagate changes in chromatin structure.
"doom", an alternative splice product of the mod(mdg4) gene, induces apoptosis and forms a complex with baculovirus inhibitor-of-apoptosis proteins in S.frugiperda cells.
Identification: Direct physical interaction with several baculovirus Inhibitors of Apoptosis (IAPs).
mod(mdg4) protein induces rapid apoptosis in insect cells. The carboxy terminal encoded by the 3' exon is responsible for the induction of apoptosis and the engagement of IAPs.
The autosomal "FLP-DFS" technique (using the P{ovoD1-18} P{FRT(whs)} P{hsFLP} chromosomes) has been used to identify the specific maternal effect phenotype for the zygotic lethal mutation. mod(mdg4) is required for germ cell viability or early oogenesis.
The repressive effect of su(Hw) on y2 expression is limited to the chromosome in which the su(Hw) binding sites in gypsy are present. The negative effect of the su(Hw) protein can be transmitted to the gene present on the other homologous paired chromosome in the presence of mod(mdg4) mutations. They allow the su(Hw) protein to act in trans and inhibit the action of the y enhancers located in the homologous chromosome on the promoter of their gene.
Sequence comparison indicates that mod(mdg4) and E(var)93D are the same gene.
The effects of su(Hw) and mod(mdg4) on a set of y alleles derived in a super-unstable system has been assessed: results suggests that the same regulatory protein may influence gene expression in opposite directions.
One mutation in mod(mdg4) is due to insertion of a Stalker element.
Source for merge of: mod(mdg4) l(3)L3101
Source for merge of: mod(mdg4) CG15802 CG7836 CG8076
Source for merge of: mod(mdg4) BcDNA:GH07769
Source for merge of: mod(mdg4) CG7859
Source for merge of: mod(mdg4) CG15500 CG15501 CG18151
Source for merge of: mod(mdg4) BcDNA:SD03001
Genetic and cytological analyses pinpoint one candidate gene for pf-2: modifier of mdg4 mod(mdg4) A complex complementation pattern between pf-2 alleles and mod(mdg4) alleles was observed.
Annotations CG15500, CG15501, CG15802, CG18151, CG7836 and CG7859 merged as CG32491 in release 3 of the genome annotation.
Source for merge of mod(mdg4) CG7859 was sequence comparison ( date:021121 ).
Source for merge of mod(mdg4) BcDNA:SD03001 was a shared cDNA ( date:030728 ).