FlyBase Gene Report: Dmel\Rab39

General Information

Symbol

Dmel\Rab39

Species

D. melanogaster

Name

Rab39

Annotation Symbol

CG12156

Feature Type

protein_coding_gene

FlyBase ID

FBgn0029959

Gene Model Status

Current

Stock Availability

17 publicly available

Gene Snapshot

Contributions welcome

Other Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Also Known As

DmRab39

Key Links

Genomic Location

Cytogenetic map

7B7-7B7

Sequence location

X:7,734,923..7,736,756 [+]

Recombination map

1-20

RefSeq locus

NC_004354 REGION:7734923..7736756

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse GBrowse

Help me choose

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

Gene Ontology (GO) Annotations (11 terms)

Molecular Function (3 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

enables protein binding

inferred from physical interaction with FLYBASE:BicD; FB:FBgn0000183

(Gillingham et al., 2014)

inferred from physical interaction with FLYBASE:prd1; FB:FBgn0037949

(Gillingham et al., 2014)

inferred from physical interaction with FLYBASE:unc-104; FB:FBgn0267002

(Gillingham et al., 2014)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables GTP binding

inferred from electronic annotation with InterPro:IPR001806, InterPro:IPR005225

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

enables GTPase activity

inferred from sequence or structural similarity with FLYBASE:Rab11; FB:FBgn0015790

(FlyBase Curators, 2008--)

Biological Process (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in Rab protein signal transduction

inferred from sequence or structural similarity with FLYBASE:Rab11; FB:FBgn0015790

(FlyBase Curators, 2008--)

involved_in vesicle-mediated transport

inferred from sequence or structural similarity with FLYBASE:Rab11; FB:FBgn0015790

(FlyBase Curators, 2008--)

Cellular Component (6 terms)

Terms Based on Experimental Evidence (4 terms)

CV Term

Evidence

References

located_in Golgi apparatus

inferred from direct assay

(Gillingham et al., 2014)

located_in late endosome

inferred from high throughput direct assay

(Chan et al., 2011)

located_in neuronal cell body

inferred from high throughput direct assay

(Chan et al., 2011)

inferred from direct assay

(Jin et al., 2012)

located_in synapse

inferred from direct assay

(Jin et al., 2012)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

located_in Golgi apparatus

inferred from biological aspect of ancestor with PANTHER:PTN001179054

(assigned by GO_Central )

(Gaudet et al., 2011)

located_in Golgi membrane

inferred from biological aspect of ancestor with PANTHER:PTN001938758

(assigned by GO_Central )

(Gaudet et al., 2011)

located_in vesicle

inferred from sequence or structural similarity with FLYBASE:Rab11; FB:FBgn0015790

(FlyBase Curators, 2008--)

Gene Group (FlyBase)

RAB GTPASES

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

RAB GTPASES -: The Rab family are members of the Ras superfamily of small GTPases. Rabs regulate vesicle trafficking including cargo selection, vesicle budding, transport, docking and targeting. They localize to different intracellular compartments directed by specific isoprenylation of C-terminal motifs. (Adapted from PMID:15731001).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Rab39 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.46

Gene model reviewed during 5.52

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Rab39-RA

FBtr0071072

NM_132177

1129

218

Rab39-RB

FBtr0307272

NM_001258639

1406

218

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

Rab39-PA

FBpp0071030

24.7

218

6.16

NP_572405

AAF46271

Rab39-PB

FBpp0298273

24.7

218

6.16

NP_001245568

AFH07282

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

218 aa isoforms: Rab39-PA, Rab39-PB

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Rab39 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Rab39_1

Linkouts

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 11 -- 12

organism | faint | ubiquitous

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

organism | faint | ubiquitous

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in Golgi apparatus

inferred from direct assay

(Gillingham et al., 2014)

located_in late endosome

inferred from high throughput direct assay

(Chan et al., 2011)

located_in neuronal cell body

inferred from high throughput direct assay

(Chan et al., 2011)

inferred from direct assay

(Jin et al., 2012)

located_in synapse

inferred from direct assay

(Jin et al., 2012)

Expression Deduced from Reporters

Reporter: PBac{I-SceI(FRT.Rab39-GAL4.ATG(loxP.3xP3-RFP))}

Stage

Tissue/Position (including subcellular localization)

Reference

pupal stage P6 -- P7

neuron | subset of pupal brain

Comment: 30-40h APF

(Chan et al., 2011)

neuropil glial sheath

Comment: 30-40h APF

(Jin et al., 2012)

glial cell of second optic chiasma | intense

Comment: 30-40h APF

(Jin et al., 2012)

neuron of adult optic lobe

Comment: 30-40h APF

(Jin et al., 2012)

mushroom body

Comment: 30-40h APF

(Jin et al., 2012)

eye photoreceptor cell

Comment: 30-40h APF

(Jin et al., 2012)

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Rab39 in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Rab39

View exonic expression by tissue for Dmel\Rab39

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0029959

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0029959

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG12156-RA

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG12156

Flygut - An atlas of the Drosophila adult midgut

FBgn0029959

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 3 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 11 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Rab39

Transgenic constructs containing regulatory region of Rab39

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation

Inferred from location

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable

Rab39^EYFP

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Rab39^GD7507

viable, with Scer\GAL4^Mef2.PR

Rab39^GD7507

viable, with Scer\GAL4^pnr-MD237

Rab39^GD7507

viable, with Scer\GAL4^tin.CΔ4

Rab39^GD7507

Other Phenotypes

Allele

short lived | heat sensitive, with Scer\GAL4^tin.CΔ4

Rab39^GD7507

visible, with Scer\GAL4^pnr-MD237

Rab39^GD7507

Phenotype manifest in

Allele

embryonic/larval dorsal branch | embryonic stage, with Scer\GAL4^btl.PU

Rab39^S23N.UAS.YFP

mesothoracic tergum, with Scer\GAL4^pnr-MD237

Rab39^GD7507

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v8.0)

Homo sapiens (Human) (5)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\RAB39A

12 of 15

Yes

Hsap\RAB39B

12 of 15

Yes

Hsap\RAB42

2 of 15

Yes

Hsap\SLCO2B1

1 of 15

Hsap\WDR1

1 of 15

Model Organism Orthologs (via DIOPT v8.0)

Mus musculus (laboratory mouse) (3)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Rab39b

13 of 15

Yes

Mmus\Rab39

12 of 15

Yes

Mmus\Rab42

3 of 15

Yes

Rattus norvegicus (Norway rat) (2)

Rnor\Rab39a

11 of 13

Yes

Rnor\Rab42

2 of 13

Yes

Xenopus tropicalis (Western clawed frog) (2)

Xtro\rab39b

9 of 12

Yes

Xtro\rab39a

3 of 12

Yes

Danio rerio (Zebrafish) (7)

Drer\rab39ba

13 of 15

Yes

Drer\rab39bb

13 of 15

Yes

Drer\rab42a

9 of 15

Yes

Drer\rab42b

6 of 15

Yes

Drer\LOC100330257

4 of 15

Yes

Drer\si:dkey-34d22.2

2 of 15

Yes

Drer\si:dkey-34d22.5

2 of 15

Yes

Caenorhabditis elegans (Nematode, roundworm) (1)

Cele\rab-39

14 of 15

Yes

Arabidopsis thaliana (thale-cress) (3)

Atha\GB2

1 of 9

Yes

Atha\RABB1a

1 of 9

Yes

Atha\RABB1C

1 of 9

Yes

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (1)

Spom\ypt4

1 of 12

Yes

Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG09190EVO )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA11442

Drosophila persimilis

Dper\GL14723

Drosophila willistoni

Dwil\GK25784

Drosophila virilis

Dvir\GJ15895

Drosophila mojavensis

Dmoj\GI16205

Drosophila grimshawi

Dgri\GH12582

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150ASI )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17020730

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_13905

Mayetiola destructor

Hessian fly

Mdes\Mdes003260

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL008959

Anopheles darlingi

American malaria mosquito

Adar\ADAC002848

Anopheles gambiae

Malaria mosquito

Agam\AGAP000433

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ008104

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0CCI )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA011280

Danaus plexippus

Monarch butterfly

Dple\DPOGS200591-PA

Heliconius melpomene

Postman butterfly

Hmel\HMEL001031

Apis florea

Little honeybee

Aflo\2394030740

Apis mellifera

Western honey bee

Amel\Rab39

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP15322

Bombus terrestris

Buff-tailed bumblebee

Bter\15211428

Linepithema humile

Argentine ant

Lhum\LH19517

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:002271

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG014254

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_02407

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_00733

Tribolium castaneum

Red flour beetle

Tcas\TC005229

Pediculus humanus

Human body louse

Phum\PHUM080090

Rhodnius prolixus

Kissing bug

Rpro\RPRC014929

Cimex lectularius

Bed bug

Clec\CLEC002713

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI004401

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_13651

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0CAJ )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strigamia maritima

European centipede

Smar\SMAR015023

Ixodes scapularis

Black-legged tick

Isca\ISCW020939

Stegodyphus mimosarum

African social velvet spider

Smim\KFM56932.1

Tetranychus urticae

Two-spotted spider mite

Turt\tetur25g01020

Tetranychus urticae

Two-spotted spider mite

Turt\tetur02g02570

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_222118

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0RUB )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Rab39

Ciona intestinalis

Vase tunicate

Cint\LOC100177885

Gallus gallus

Domestic chicken

Ggal\LOC428212

Gallus gallus

Domestic chicken

Ggal\RAB39

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v8.0)

Drosophila melanogaster (Fruit fly) (34)

Gene Symbol

Score

Source

Alignment

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

1 of 10

1 of 10

1 of 10

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 2 )

Human Ortholog

Disease

Evidence

References

RAB39B; RAB39B, member RAS oncogene family

model of Waisman syndrome

IEA

(FlyBase, 2019-)

model of non-syndromic X-linked intellectual disability 72

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

RAB39A; RAB39A, member RAS oncogene family

12 of 15

RAB39B; RAB39B, member RAS oncogene family

12 of 15

300774

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

View in Interactions Browser

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

Rab39 - BicD

pull down, western blot, peptide massfingerprinting

(Gillingham et al., 2014, Gillingham et al., 2014)

Rab39 - GCC88

two hybrid

(Sinka et al., 2008)

Rab39 - LRR

pull down, peptide massfingerprinting

(Gillingham et al., 2014)

Rab39 - Mpcp2

experimental knowledge based

(Guruharsha et al., 2011)

Rab39 - ema

pull down, peptide massfingerprinting, western blot

(Gillingham et al., 2014, Gillingham et al., 2014)

Rab39 - prd1

pull down, peptide massfingerprinting, western blot

(Gillingham et al., 2014, Gillingham et al., 2014)

Rab39 - unc-104

pull down, peptide massfingerprinting, western blot

(Gillingham et al., 2014, Gillingham et al., 2014)

Summary of Genetic Interactions

esyN Network Diagram

esyN Network Key:

Suppression

Enhancement

View in Interactions Browser

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

dnd

suppressible

Rab39

(Caviglia et al., 2016)

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0029959

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

31684

MIST (protein-protein) - An integrated Molecular Interaction Database

Rab39

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

1-20

Cytogenetic map

7B7-7B7

Sequence location

X:7,734,923..7,736,756 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

7B7-7B7

Limits computationally determined from genome sequence between P{EP}CHES-1-like^EP1453 and P{EP}EP1209

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

1-20

(FlyBase, 2016)

1-21.6

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (17)

Bloomington

62560

w¹¹¹⁸ TI{TI}Rab39^EYFP

9825

y¹ w^*; P{UASp-YFP.Rab39}13

25953

y¹ v¹; P{TRiP.JF01973}attP2

53995

y¹ v¹; P{TRiP.HMJ21399}attP40

9822

y¹ w^* P{UASp-YFP.Rab39.Q69L}02

9823

y¹ w^*; P{UASp-YFP.Rab39.Q69L}14

23247

y¹ w^*; P{UAST-YFP.Rab39.S23N}04

9824

y¹ w^*; P{UAST-YFP.Rab39.S23N}Ir76b⁰⁵

18353

y¹ w^67c23 P{Mae-UAS.6.11}Rab39^GG01805

VDRC

v110793

P{KK100159}VIE-260B

v31665

w¹¹¹⁸; P{GD7507}v31665

v31666

w¹¹¹⁸; P{GD7507}v31666/CyO

More stocks available...

Genomic Clones (16)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (36)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

RE37651

Other clones

FI07418

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0029959

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

SD25728

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0029959

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

31684

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for database merge of

Additional comments

Other Comments

dsRNA has been made from templates generated with primers directed against this gene.

(Kouranti et al., 2006)

dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R⁺ cell morphology.

(Kiger et al., 2003)

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 36 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

31684

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0029959

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0029959

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Rab39_1

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG12156

Flygut - An atlas of the Drosophila adult midgut

FBgn0029959

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

31684

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC005229

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG12156

modMine - A data warehouse for the modENCODE project

FBgn0029959

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0029959

DRSC - Results frm RNAi screens

FBgn0029959

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0029959

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG12156-RA

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0029959

FlyMine - An integrated database for Drosophila genomics

FBgn0029959

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

31684

MIST (protein-protein) - An integrated Molecular Interaction Database

Rab39

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Synonyms and Secondary IDs (6)

Reported As

Symbol Synonym

24640395

(Rojas et al., 2012)

AAF46271

(Armstrong, 2000)

CG12156

(Aradska et al., 2015, Dunst et al., 2015, Hosono et al., 2015, Meadows, 2014.12.12, Ni et al., 2010.12.1, Perkins et al., 2009.1.15, Sinka et al., 2008, Zhang et al., 2007, Colicelli, 2004)

DmRab39

(Pereira-Leal and Seabra, 2001, Pereira-Leal and Seabra, 2001)

rab39

(Lammers et al., 2017, Jin et al., 2012, Chan et al., 2011)

Name Synonyms

Rab39

Secondary FlyBase IDs

Datasets (1)

Study focus (1)

Experimental Role

Project

Project Type

Title

bait_protein

Rab_Effectors_interaction_map

interactome

Interaction map generated by purification of most Rab factors, with identification of copurifying effectors by mass spectrometry.

References (65)

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