FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\βTub60D
Open Close
General Information
Symbol
Dmel\βTub60D
Species
D. melanogaster
Name
β-Tubulin at 60D
Annotation Symbol
CG3401
Feature Type
FlyBase ID
FBgn0288686
Gene Model Status
Stock Availability
Gene Summary
Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin. (UniProt, P08841)
Contribute a Gene Snapshot for this gene.
Also Known As

β3-tubulin, β-tubulin, β3 tubulin, β3, tubulin

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
2-106
RefSeq locus
NT_033778 REGION:24305881..24313099
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (12 terms)
Molecular Function (3 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
enables GTP binding
inferred from biological aspect of ancestor with PANTHER:PTN000172598
inferred from electronic annotation with InterPro:IPR002453
inferred from electronic annotation with InterPro:IPR002453
inferred from biological aspect of ancestor with PANTHER:PTN000172598
Biological Process (7 terms)
Terms Based on Experimental Evidence (4 terms)
CV Term
Evidence
References
involved_in axon guidance
inferred from mutant phenotype
involved_in axonogenesis
inferred from mutant phenotype
involved_in larval behavior
inferred from mutant phenotype
inferred from mutant phenotype
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN000172598
involved_in mitotic cell cycle
inferred from biological aspect of ancestor with PANTHER:PTN000172598
Cellular Component (2 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
located_in cytoplasm
inferred from high throughput direct assay
located_in microtubule
inferred from direct assay
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
is_active_in cytoplasm
inferred from biological aspect of ancestor with PANTHER:PTN000172598
is_active_in microtubule
inferred from biological aspect of ancestor with PANTHER:PTN000172598
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the tubulin family. (P08841)
Catalytic Activity (EC/Rhea)
GTPase activity
RHEA 19669:
Summaries
Gene Group (FlyBase)
BETA TUBULINS -
Tubulins are cytoskeletal proteins. α- and β-tubulin heterodimers polymerise to form microtubules, the roles of which include mechanical strength, intracellular trafficking and chromosome segregation. GTP molecules associated with β-tubulin molecules are hydrolyzed shortly after being incorporated into the polymerizing microtubules. GTP hydrolysis alters the conformation of the tubulin molecules and drives the dynamic behavior of microtubules. (Adapted from PMID:1121746 and PMID:25339962).
Protein Function (UniProtKB)
Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin.
(UniProt, P08841)
Phenotypic Description (Red Book; Lindsley and Zimm 1992)
βTub60D (β3t)
A structural gene for β-tubulin. The mRNA first appears in the mesoderm during mid-embryogenesis at about the time when synthesis of β-tubulin begins and later disappears from the embryo when synthesis of the tubulin ends; the transcript reappears in the mesoderm during the pupal period (Raff et al., 1982; Natzle and McCarthy, 1984; Raff, 1984; Rudolph et al., 1987; Gasch et al., 1988; Kimble et al., 1989). During embryogenesis, βTub60C is only expressed in developing muscles; in pupae, it is expressed in adult muscles, imaginal discs, wing blades, optic lobes, ovaries and testes, but ceases (except in ovaries and testes) in adults. As compared to the tubulin encoded by βTub56D, the product of βTub60C is but a minor component of the total tubulin pool (Rudolph et al., 1987). When synthesis of the βTub60C tubulin begins in the embryo, α-Tubulin synthesis is increased (Raff et al., 1982).
Summary (Interactive Fly)

beta Tubulin60D - microtubular cytoskeleton - transiently expressed in the embryo - higher pupal levels in the developing musculature - Adult expression confined to specific somatic cells in the gonads

Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
2

Please see the JBrowse view of Dmel\βTub60D for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry P08841)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
Comments on Gene Model

Gene model reviewed during 5.52

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0072270
2518
454
FBtr0343443
2515
453
Additional Transcript Data and Comments
Reported size (kB)

2.6 (northern blot)

1.362 (sequence analysis)

2.5 (northern blot)

2.3 (northern blot)

Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments
Reported size (kDa)

454 (aa); 53 (kD predicted)

Comments

Used as a cell marker for the entire myoblast

population and can be followed into all somatic muscle fibers.

External Data
Subunit Structure (UniProtKB)

Dimer of alpha and beta chains. A typical microtubule is a hollow water-filled tube with an outer diameter of 25 nm and an inner diameter of 15 nM. Alpha-beta heterodimers associate head-to-tail to form protofilaments running lengthwise along the microtubule wall with the beta-tubulin subunit facing the microtubule plus end conferring a structural polarity. Microtubules usually have 13 protofilaments but different protofilament numbers can be found in some organisms and specialized cells.

(UniProt, P08841)
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\βTub60D using the Feature Mapper tool.

External Data
Crossreferences
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

0.33

Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference

Comment: reference states 0-10 hr AEL

Comment: reference states 9-15 hr AEL

radioisotope in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

βTub60D is expressed in the scolopidial dendritic cap cells of stage 17 embryos. Expression is not observed in these cells earlier, nor in the cap cells of third instar larvae.

The expression pattern of βTub60D protein is excluded from en expressing cells.

Marker for
Subcellular Localization
CV Term
Evidence
References
located_in cytoplasm
inferred from high throughput direct assay
located_in microtubule
inferred from direct assay
Expression Deduced from Reporters
Reporter: P{AI15.2}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{β3/lac-6.0}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{β3/lac-6.0c}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{β3/lac-6.0cDI}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{β3/lac-6.0I}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{βTub60D-0.23I}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{βTub60D-2D}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{βTub60D-2U}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{βTub60D-13}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{βTub60D-14}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{βTub60D-15}
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{βTub60D-16}
Stage
Tissue/Position (including subcellular localization)
Reference
chordotonal organ

Comment: expression not present in mesoderm

Stage
Tissue/Position (including subcellular localization)
Reference
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{WHL4}
Stage
Tissue/Position (including subcellular localization)
Reference
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\βTub60D in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Images
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 23 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 15 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of βTub60D
Transgenic constructs containing regulatory region of βTub60D
Aberrations (Deficiencies and Duplications) ( 7 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
chordotonal organ & microtubule (with Df(2R)Px2)
medulla & axon (with βTub60D1)
medulla & axon (with βTub60D4)
photoreceptor cell R7 & axon (with βTub60D1)
photoreceptor cell R7 & axon (with βTub60D4)
photoreceptor cell R8 & axon (with βTub60D1)
photoreceptor cell R8 & axon (with βTub60D4)
thorax & macrochaeta
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (24)
10 of 14
Yes
Yes
1  
9 of 14
No
Yes
9 of 14
No
No
1  
8 of 14
No
Yes
8 of 14
No
No
8 of 14
No
Yes
8 of 14
No
Yes
7 of 14
No
No
1  
7 of 14
No
No
1  
6 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
1  
1 of 14
No
Yes
1 of 14
No
No
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (16)
9 of 14
Yes
No
8 of 14
No
Yes
8 of 14
No
No
8 of 14
No
Yes
7 of 14
No
No
7 of 14
No
No
7 of 14
No
No
6 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Mus musculus (laboratory mouse) (20)
9 of 14
Yes
No
8 of 14
No
Yes
8 of 14
No
No
8 of 14
No
No
8 of 14
No
Yes
7 of 14
No
No
7 of 14
No
No
5 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (14)
6 of 13
Yes
No
6 of 13
Yes
No
6 of 13
Yes
Yes
6 of 13
Yes
No
5 of 13
No
No
5 of 13
No
No
5 of 13
No
No
3 of 13
No
Yes
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
Danio rerio (Zebrafish) (23)
9 of 14
Yes
No
8 of 14
No
No
8 of 14
No
No
8 of 14
No
No
8 of 14
No
No
7 of 14
No
Yes
7 of 14
No
No
7 of 14
No
No
7 of 14
No
Yes
3 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (17)
8 of 14
Yes
Yes
8 of 14
Yes
No
8 of 14
Yes
Yes
8 of 14
Yes
Yes
8 of 14
Yes
No
5 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
Anopheles gambiae (African malaria mosquito) (12)
12 of 12
Yes
Yes
Arabidopsis thaliana (thale-cress) (17)
13 of 13
Yes
Yes
13 of 13
Yes
Yes
12 of 13
No
No
12 of 13
No
No
12 of 13
No
No
12 of 13
No
No
12 of 13
No
Yes
12 of 13
No
Yes
12 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
Saccharomyces cerevisiae (Brewer's yeast) (4)
11 of 13
Yes
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
Schizosaccharomyces pombe (Fission yeast) (4)
11 of 12
Yes
No
2 of 12
No
No
1 of 12
No
No
1 of 12
No
No
Escherichia coli (enterobacterium) (0)
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:βTub60D. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (11)
11 of 13
11 of 13
9 of 13
5 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 5 )
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    Summary of Genetic Interactions
    Interaction Browsers

    Please look at the allele data for full details of the genetic interactions
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Subunit Structure (UniProtKB)
    Dimer of alpha and beta chains. A typical microtubule is a hollow water-filled tube with an outer diameter of 25 nm and an inner diameter of 15 nM. Alpha-beta heterodimers associate head-to-tail to form protofilaments running lengthwise along the microtubule wall with the beta-tubulin subunit facing the microtubule plus end conferring a structural polarity. Microtubules usually have 13 protofilaments but different protofilament numbers can be found in some organisms and specialized cells.
    (UniProt, P08841 )
    Linkouts
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    FlyBase
    External Links
    External Data
    Linkouts
    KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    Class of Gene
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    2R
    Recombination map
    2-106
    Cytogenetic map
    Sequence location
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    60C6-60C6
    Left limit from inclusion within Df(2R)Px2 (citation unavailable) Right limit from inclusion within Df(2R)Px1 (citation unavailable); Limits computationally determined from genome sequence between P{lacW}Nop60Bk05318 and P{PZ}bs03267&P{lacW}l(2)k10502k10502
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    60C7-60C8
    (determined by in situ hybridisation)
    60C-60C
    (determined by in situ hybridisation)
    Experimentally Determined Recombination Data
    Location

    2-107.3

    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (128)
    Genomic Clones (16)
     

    Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

    cDNA Clones (248)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
    Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

        cDNA Clones, End Sequenced (ESTs)
        Other clones
        RNAi and Array Information
        Linkouts
        Antibody Information
        Laboratory Generated Antibodies
         
        Commercially Available Antibodies
         
        Cell Line Information
        Publicly Available Cell Lines
         
          Other Stable Cell Lines
           
            Other Comments

            The syncytial visceral and somatic musculature develops independently of βTub60D during Drosophila embryogenesis.

            bap and bin are required for activation of βTub60D in the visceral mesoderm.

            The expression of βTub60D in several embryonic sense organs makes sense of the behavioral defects of pre-lethal βTub60D mutant larvae.

            The vm1 enhancer of the βTub60D gene contains a complex array of elements that are involved in transactivation by a combination of tissue- and position- specific factors including tin and Ubx.

            Mutants do not exhibit defects in the denticle belt of hairs of the larvae.

            βTub60D is directly repressed by en protein. The first intron of the βTub60D locus contains several en protein binding sites.

            Myogenesis and sarcomere integrity are normal in mutant larvae and embryos, somatic muscle functions normally. Midgut morphology and gut function are defective, but visceral muscle functions normally.

            βTub60D is the major isoform in embryonic muscle of D.melanogaster and muscle expression of the homolog is conserved in D.simulans and D.virilis.

            Ecdysteroid-regulated gene.

            βTub60D gene in Kc cells has the same structure as the gene in intact Drosophila. The gene encodes two isoforms with one amino acid difference. Gene expression is regulated by the steroid hormone 20-OHE in a time and hormonal concentration-dependent fashion, without requirement of protein synthesis.

            A 360bp intronic regulatory fragment that carries several ecdysone responsive elements has been identified.

            Nucleotide excision repair (NER) of ultraviolet (UV) light induced cyclobutane pyrimidine dimers (CPDs) are assayed in Kc cells that respond to steroid hormone 20-hydroxyecdysone treatment by induction of βTub60D expression, βTub60D is not expressed under standard culture conditions.

            Analysis of the regulatory capacities of the intron in βTub60D revealed 6 redundant cis-acting elements, which act at different developmental stages in the same mesodermal derivatives, and that the visceral mesoderm has anterior-posterior graded early action of an enhancer regulator. The pattern of βTub60D expression is sensitive to Ubx : ectopic Ubx expression causes activity of enhancer in entire visceral mesoderm.

            βTub60D can support only a subset of the multiple functions normally performed by βTub85D. Coexpression of βTub60D and βTub85D in the male germ line allows spindles and all classes of cytoplasmic microtubules to assemble and function normally. However when βTub60D exceeds 20% of the total testis β-tubulin pool it acts in a dominant way to disrupt normal axoneme assembly.

            βTub60D is essential for viability and fertility.

            The first intron of the βTub60D carries a tissue specific enhancer element that is required for expression in the visceral muscles that can also efficiently function positioned downstream.

            The expression of βTub60D is accompanied by a coordinate transient increase in the level of synthesis of the embryonic α-tubulins, thereby maintaining an approximately equimolar synthesis of α and β-tubulins throughout embryogenesis.

            Relationship to Other Genes
            Source for database merge of

            Source for merge of: βTub60D Pin

            Additional comments
            Nomenclature History
            Source for database identify of

            Source for identity of: βTub60D CG3401

            Nomenclature comments
            Etymology
            Synonyms and Secondary IDs (72)
            Reported As
            Symbol Synonym
            Tac
            β60C
            β3 tubulin
            β3-tubulin
            βTub3
            Name Synonyms
            60C β tubulin
            Beta tubulin
            Pin
            Tack
            beta tubulin
            beta-3 Tubulin
            beta-3-tubulin
            beta3-Tubulin
            betaTub60D
            β-3 tubulin
            β-3tubulin
            β-Tubulin at 60A
            β-Tubulin at 60D
            β-tubulin 60D
            β-tubulin at 60D
            β-tubulin60D
            βTubulin
            Secondary FlyBase IDs
            • FBgn0003888
            • FBgn0003088
            Datasets (0)
            Study focus (0)
            Experimental Role
            Project
            Project Type
            Title
            Study result (0)
            Result
            Result Type
            Title
            External Crossreferences and Linkouts ( 51 )
            Sequence Crossreferences
            NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
            GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
            GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
            RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
            UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
            UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
            UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
            Other crossreferences
            AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
            DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
            EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
            FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
            KEGG Genes - Molecular building blocks of life in the genomic space.
            MARRVEL_MODEL - MARRVEL (model organism gene)
            Linkouts
            FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
            Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
            iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
            Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
            KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.
            Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
            References (325)