slp, sloppy-paired, sloppy paired, slp-1, FoxG
transcription factor - forkhead domain - has combined characteristics of a gap, pair rule and segment polarity gene - regulates embryonic segmentation, ventral fate specification in the retina, and temporal patterning of the neuroblasts that produce medulla neurons
Please see the JBrowse view of Dmel\slp1 for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.47
1.5 (northern blot)
There is only one protein coding transcript and one polypeptide associated with this gene
322 (aa)
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\slp1 using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as ventral nerve cord anlage
Comment: reported as crystal cell specific anlage
Expression was examined at four phases of embryonic stage 5. slp1 is initially expressed in a nonperiodic gap-like pattern in the anterior, which begins to resolve into stripes in phase 2 (5-17'); however, the full 7-stripe pattern arises only during phase 3 (17-30'). The stripes emerge fully refined, with sharp, evenly spaced stripes.
slp1 is expressed in 14 two-cell-wide stripes, corresponding to the two posterior-most cells in parasegments 1-13 as well as a stripe 0 that is anterior to parasegment 1. There is also expression in a band of dorsal cells anterior to the presegmental region.
slp1 transcripts first appear in 0-3hr embryos and show maximal expression in 3-6hr embryos. Levels fall off steadily until the end of embryogenesis. Transcripts are also expressed in first and third instar larvae. slp1 transcripts are first detected by in situ hybridization in a dynamic gap-gene-like pattern in stage 4 embryos. From stage 5, a metameric pattern develops with six 2-cell-wide stripes appearing posterior to the head stripe. The anterior stripes appear first, followed by more posterior stripes. Stripes also develop ventrally first and then spread dorsally. The stripes remain unconnected on the dorsal side. After the primary stripes are fully established, secondary stripes develop in alternate segments. They also accumulate from anterior to posterior. They are detected laterally first and then spread in the dorsal and ventral directions but never connect on the dorsal side. By stage 6, the secondary stripes are established. They are weaker and don't extend as far dorsally as the primary stripes. During germ band extension, the stripes broaden to 4-5 cells and an additional stripe appears at the tip of the germ band. Segmentally repeated lateral cell clusters that are connected to the ventral stripes by thin stalks also express slp1. A complex pattern of slp1 expression is also observed in the head during germ band extension. The metameric pattern fades as the germ band retracts. Expression is lost in the stalk regions connecting the lateral clusters. New expression is observed in epidermal cells forming ventrolateral oblong cell clusters and in dorsal epidermal cells that will fuse at the dorsal midline. This staining fades as dorsal closure is completed. slp1 expression is also observed after germ band retraction in the proventriculus and in the ventral nerve cord. The patterns of slp1 and slp2 gene expression are very similar but slp2 expression is slightly time delayed relative to slp1 and has minor spatial differences. Double labeling with slp and either ftz, en, or eve probes reveals that slp1 and slp2 are expressed in the posterior half of each parasegment just anterior to the parasegmental boundary.
Comment: stripe of expression
Comment: stripe of expression
Comment: rows D, E, F
At embryonic stage 11, slp1 is localized to the anterior compartment of segments.
Expression in procephalic neuroblasts stage 9-11: tritocerebrum - d2, d6, d7, v3; deuterocerebrum - d1, d4, d7, d8, v2, v3, v5, v6; protocerebrum - ad2, ad8, d8, cd9, cd12, cd19, cv4, cv6, cv8, pd1, pd11, pd15, pd16, pv1, pv3
At cellular blastoderm, slp1 protein is found in the posterior portion of each even-numbered parasegment, adjacent to but not overlapping eve protein. During gastrulation, secondary stripes appear, just anterior to the ftz stripes. During germband elongation, every parasegment has a slp1 protein stripe adjacent to en, overlapping wg and extending anterior. At stage 10, this stripe is 3-4 cells wide.
JBrowse - Visual display of RNA-Seq signals
View Dmel\slp1 in JBrowse





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Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Class IV neuron formation is suppressed by slp1.
DNA-protein interactions: genome-wide binding profile assayed for slp1 protein in 2-3 hr embryos; see BDTNP1_TFBS_slp1 collection report.
Induction of slp1 by wg involves pan binding to multiple binding sites within a wg-responsive enhancer in the 5' region of slp1. wg signalling induces striped expression of slp1/slp2 in the mesoderm, providing striped mesodermal domains competent to respond to subsequent slp1/slp2-independent wg signals that induce somatic muscle and heart progenitors. In wg expressing ectodermal cells, slp1/slp2 is an integral component in an autocrine feedback loop of wg signalling.
In a sample of 79 genes with multiple introns, 33 showed significant heterogeneity in G+C content among introns of the same gene and significant positive correspondence between the intron and the third codon position G+C content within genes. These results are consistent with selection adding against preferred codons at the start of genes.
slp1 is an activator of wg and a repressor of en and through these activities the distribution of slp1 defines en-competent cells (lacking slp1 protein) and wg-competent cells (containing slp1 protein). The localised expression of slp1 is required to maintain the proper anterior border of the en stripes and restrict wg expression to one side of the en/hh domain.
Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5.
Mutations in zygotic pair rule gene slp1 do not interact with RpII140wimp.