FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\Adcy1
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General Information
Symbol
Dmel\Adcy1
Species
D. melanogaster
Name
Adenylate cyclase 1
Annotation Symbol
CG9533
Feature Type
FlyBase ID
FBgn0003301
Gene Model Status
Stock Availability
Enzyme Name (EC)
adenylate cyclase (4.6.1.1)
Gene Summary
Adenylate cyclase 1 (Adcy1) encodes a membrane-bound Ca[2+]/calmodulin-activated adenylyl cyclase that is responsible for synthesis of cAMP. It plays a key role in regulating behavioral, neuroanatomical, and electrophysiological plasticity. [Date last reviewed: 2019-03-14] (FlyBase Gene Snapshot)
Also Known As

rut, rutabaga, AC, adenylyl cyclase, Rut-AC

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
1-49
RefSeq locus
NC_004354 REGION:14787478..14826073
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (32 terms)
Molecular Function (3 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
inferred from direct assay
inferred from mutant phenotype
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN002899368
inferred from electronic annotation with InterPro:IPR009398
Biological Process (27 terms)
Terms Based on Experimental Evidence (23 terms)
CV Term
Evidence
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from direct assay
involved_in axon extension
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
involved_in circadian rhythm
inferred from mutant phenotype
inferred from mutant phenotype
inferred from direct assay
inferred from mutant phenotype
involved_in learning or memory
inferred from mutant phenotype
involved_in learning
inferred from mutant phenotype
involved_in medium-term memory
inferred from mutant phenotype
involved_in memory
inferred from mutant phenotype
inferred from mutant phenotype
involved_in olfactory learning
inferred from mutant phenotype
inferred from mutant phenotype
involved_in response to heat
inferred from mutant phenotype
inferred from mutant phenotype
involved_in short-term memory
inferred from mutant phenotype
involved_in sleep
inferred from mutant phenotype
Terms Based on Predictions or Assertions (7 terms)
CV Term
Evidence
References
inferred from electronic annotation with InterPro:IPR009398
inferred from biological aspect of ancestor with PANTHER:PTN002899368
involved_in courtship behavior
traceable author statement
involved_in mating behavior
traceable author statement
involved_in olfactory learning
traceable author statement
Cellular Component (2 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
located_in membrane
inferred from direct assay
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
is_active_in plasma membrane
inferred from biological aspect of ancestor with PANTHER:PTN002899368
located_in plasma membrane
inferred from electronic annotation with InterPro:IPR009398
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (P32870)
Catalytic Activity (EC/Rhea)
adenylate cyclase activity
ATP = 3',5'-cyclic AMP + diphosphate (4.6.1.1)
RHEA 15389:
Summaries
Gene Snapshot
Adenylate cyclase 1 (Adcy1) encodes a membrane-bound Ca[2+]/calmodulin-activated adenylyl cyclase that is responsible for synthesis of cAMP. It plays a key role in regulating behavioral, neuroanatomical, and electrophysiological plasticity. [Date last reviewed: 2019-03-14]
Gene Group (FlyBase)
ADENYLATE CYCLASES -
Adenylate cyclases catalyze the synthesis of cAMP from ATP, yielding diphosphate as a by-product. (Adapted from FBrf0238856).
Protein Function (UniProtKB)
This is a membrane-bound, calmodulin-sensitive adenylyl cyclase. Inactivation of this cyclase leads to a learning and memory defect.
(UniProt, P32870)
Phenotypic Description (Red Book; Lindsley and Zimm 1992)
rut: rutabaga (J.C. Hall)
Mutant males and homozygous females impaired in several types of learning and memory; associative conditioning defective in tests using either reward (Tempel et al., 1983) or aversive unconditioned stimuli (e.g. Dudai, 1983, Proc. Nat. Acad. Sci. USA 80: 5445-48; Dudai, Svi, and Segel, 1984, J. Comp. Physiol. 155: 569-76; Livingstone et al.), including tests of "classical" (e.g. Tully and Quinn, 1985) and "operant" conditioning (Mariath, 1985); able to learn in associative conditioning tests involving visual cues, but at subnormal levels (Folkers, 1982, J. Insect. Physiol. 28: 535-39), and memory appears to be normal. Learning scores subnormal when measured immediately after certain types of training; then either scores decay rapidly with time (Tempel et al., 1983; Tully and Quinn, 1985) or there is no indication of memory (Mariath). Although defective in some aspects of learning, heterozygous females behave essentially normally in shock/odor tests (Dudai et al., 1983). Courtship also defective; unlike wild-type males, rut males court inseminated and virgin females with equal vigor; they may be unable to distinguish them (Gailey et al.). In tests of non-associative conditioning, rut shows aberrant habituation and sensitization to sugar stimuli (Duerr and Quinn); rut males subnormal in learning to avoid courtship of immature males; and homozygous or hemizygous rut females defective in "priming" of mating behavior by prestimulations with artificial courtship songs; effects of such acoustical prestimulations decay more rapidly than normal (Kyriacou and Hall). In either the homozygous or heterozygous condition rut acts as a partial suppressor of the sterility of homozygous dnc females inversely related to degree of rescue, suggesting both a maternal and a zygotic role of rut (Bellen, Gregory, Olsson, and Kiger, 1987, Dev. Biol. 121: 432-44; Bellen and Kiger, 1988, Roux's Arch. Dev. Biol. 197: 258-68). Double mutant females mated to Canton-S males lay many eggs, but most of the eggs fail to hatch. Biochemically, rut influences adenylate cyclase activity (Dudai et al., Livingstone et al.); it seems to abolish a calcium or calmodulin stimulated component of adenylate cyclase activity (Livingstone, Dudai, and Zvi, 1984, Neurosci. Lett. 47: 119-24), while leaving intact a component of activity stimulated by guanyl nucleotides, fluoride, or monoamines, suggesting that rut may directly affect the catalytic subunit of the adenylate cyclase complex (Livingstone et al., Dudai et al., 1984); consistent with this hypothesis is the observation that cyclase activity in rut is lower than normal, even in the presence of forskolin (Dudai et al., 1984; Dudai, Sher, Segal, and Yovell, 1985, J. Neurogenet. 2: 365-80). rut primarily affects total cyclase activity in the adult abdomen, with progressively milder effects on thoracic and head cyclase (Livingstone et al., Dudai and Svi, 1985, J. Neurochem. 45: 355-64); reduction of abdominal adenylate cyclase activity of rut1>rut2>rut3 (Bellen et al.); the majority of adenylate cyclase activity in wild type is in a particulate fraction, and rut lacks up to 35% of total particulate activity (Dudai and Zvi, 1985). That rut may in fact encode a component of the fly's adenylate cyclase catalytic subunit is suggested by altered Km of enzyme activity in mutant flies (e.g. Dudai et al., 1983, 1985) and by the fact that hypoploidy of rut+ in females leads to approximately half normal levels of that cyclase activity specifically affected by the rut mutations (Livingstone et al.), and hyperploidy for the normal allele leads to increased activity (Livingstone). The biochemical results suggest that rut1 could be a null mutation.
Summary (Interactive Fly)

membrane-bound Ca2+/calmodulin-activated adenylyl cyclase - a crucial memory pathway protein - responsible for synthesis of cAMP - plays a key role in regulating behavioral, neuroanatomical, and electrophysiological plasticity

Gene Model and Products
Number of Transcripts
7
Number of Unique Polypeptides
6

Please see the JBrowse view of Dmel\Adcy1 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry P32870)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
Comments on Gene Model

Gene model reviewed during 5.50

Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Gene model reviewed during 5.46

Low-frequency RNA-Seq exon junction(s) not annotated.

Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated.

Gene model reviewed during 5.52

Multiphase exon postulated: exon reading frame differs in alternative transcripts; overlap >20aa.

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0073992
9269
2248
FBtr0305581
8690
2055
FBtr0333654
8963
2146
FBtr0333655
8976
2171
FBtr0333656
7557
1391
FBtr0333657
7905
1507
FBtr0340467
9038
2171
Additional Transcript Data and Comments
Reported size (kB)

9.5, 7.5 (northern blot)

Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
FBpp0073809
248.8
2248
6.81
FBpp0294032
228.6
2055
6.66
FBpp0305810
238.4
2146
6.68
FBpp0305811
241.4
2171
6.71
FBpp0305812
153.7
1391
7.88
FBpp0305813
166.5
1507
7.82
FBpp0309409
241.4
2171
6.71
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

2171 aa isoforms: Adcy1-PD, Adcy1-PG
Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Adcy1 using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-1.06

Transcript Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

Adcy1 transcripts are expressed at high levels in the mushroom body perikarya and at lower levels in most cells of the central brain, the optic lobes, the subesophageal ganglion and the thoracic/abdominal ganglia.

Adcy1 transcripts are reduced to nearly background levels in the Adcy1rut-178 mutant.

Adcy1 transcripts levels are below wild type levels in the Adcy1MB769 mutant.

Adcy1 transcripts are reduced to nearly background levels in the Adcy1rut-1084 mutant.

Adcy1 transcript levels are nearly wild type in the Adcy1MB1951 mutant.

Adcy1 transcripts are reduced to nearly background levels in the rut2080 mutant.

Adcy1 transcripts are reduced to nearly background levels in the Adcy1MB2769 mutant.

Adcy1 transcripts were detected in adult RNA.

A similar pattern of hybridization is observed on northern blots of RNA isolated from Adcy1rut-1 homozygotes and wild type flies.

Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

Adcy1 protein is strongly expressed in the mushroom body alpha', beta', alpha, beta and gamma lobes, and spur, and weakly expressed in the mushroom body calyx.

Adcy1 protein is strongly expressed in the neuropil of the mushroom bodies along the stalk and in the α, β, and γ lobes, suggesting that it is transported into the axonal projections of the mushroom body neurons. It is expressed at lower levels in the mushroom body calyx and in the neuropil of the central brain, the optic lobes, the subesophageal ganglion, and the thoracic/abdominal ganglia.

No Adcy1 protein immunostaining above background was observed in mushroom bodies of Adcy1rut-178 mutants.

Adcy1 protein immunostaining was reduced but detectable in mushroom bodies of Adcy1MB769 mutants.

Marker for
 
Subcellular Localization
CV Term
Evidence
References
located_in membrane
inferred from direct assay
Expression Deduced from Reporters
Reporter: P{lArB}Adcy1743
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{lArB}Adcy14453
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{lArB}Adcy15124
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{lArB}Adcy15249
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{lArB}Adcy15399
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{lArB}Adcy1MB769
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{lArB}Adcy1MB1951
Stage
Tissue/Position (including subcellular localization)
Reference
Reporter: P{lArB}Adcy1MB2769
Stage
Tissue/Position (including subcellular localization)
Reference
Stage
Tissue/Position (including subcellular localization)
Reference
Stage
Tissue/Position (including subcellular localization)
Reference
Stage
Tissue/Position (including subcellular localization)
Reference
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Adcy1 in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Flygut - An atlas of the Drosophila adult midgut
Images
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 33 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Adcy1
Transgenic constructs containing regulatory region of Adcy1
Aberrations (Deficiencies and Duplications) ( 12 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
anterior fascicle & synapse, with Scer\GAL4elav-C155
axon & motor neuron | conditional ts
cell body & giant fibers
growth cone & embryonic neuron
neuromuscular junction & abdominal 4 ventral longitudinal muscle 3 & larva
neuromuscular junction & abdominal 4 ventral longitudinal muscle 4 & larva
RP3 neuron & synapse
RP3 neuron & synaptic vesicle
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (23)
11 of 14
Yes
Yes
4 of 14
No
No
1  
4 of 14
No
No
3 of 14
No
No
1  
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
50  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (23)
9 of 14
Yes
Yes
4 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Mus musculus (laboratory mouse) (23)
10 of 14
Yes
Yes
4 of 14
No
No
4 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (12)
9 of 13
Yes
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
Danio rerio (Zebrafish) (30)
11 of 14
Yes
Yes
9 of 14
No
Yes
5 of 14
No
No
5 of 14
No
No
5 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (39)
6 of 14
Yes
No
5 of 14
No
No
4 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Anopheles gambiae (African malaria mosquito) (25)
12 of 12
Yes
Yes
Arabidopsis thaliana (thale-cress) (0)
Saccharomyces cerevisiae (Brewer's yeast) (1)
1 of 13
Yes
No
Schizosaccharomyces pombe (Fission yeast) (1)
1 of 12
Yes
No
Escherichia coli (enterobacterium) (0)
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:Adcy1. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (27)
7 of 13
6 of 13
5 of 13
5 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
3 of 13
3 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
1 of 13
1 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 3 )
Potential Models Based on Orthology ( 1 )
Human Ortholog
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 4 )
Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
Functional Complementation Data
Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
Interactions
Summary of Physical Interactions
Interaction Browsers

Please see the Physical Interaction reports below for full details
RNA-RNA
Physical Interaction
Assay
References
Summary of Genetic Interactions
Interaction Browsers

Please look at the allele data for full details of the genetic interactions
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
suppressible
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
External Data
Linkouts
BioGRID - A database of protein and genetic interactions.
DroID - A comprehensive database of gene and protein interactions.
MIST (genetic) - An integrated Molecular Interaction Database
MIST (protein-protein) - An integrated Molecular Interaction Database
Pathways
Signaling Pathways (FlyBase)
Metabolic Pathways
FlyBase
External Links
KEGG Metabolic Pathways - A collection of manually drawn metabolic pathway maps representing knowledge of molecular interaction, reaction and relation networks.
External Data
Linkouts
KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.
Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
Class of Gene
Genomic Location and Detailed Mapping Data
Chromosome (arm)
X
Recombination map
1-49
Cytogenetic map
Sequence location
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
12F4-12F5
Limits computationally determined from genome sequence between P{EP}EP1599 and P{EP}EP334&P{EP}EP977;
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
12F-13A
(determined by in situ hybridisation)
12F5-12F7
(determined by in situ hybridisation)
Experimentally Determined Recombination Data
Location
Notes
Stocks and Reagents
Stocks (53)
Genomic Clones (25)
cDNA Clones (16)
 

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced
BDGP DGC clones
    Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
        Other clones
          RNAi and Array Information
          Linkouts
          DRSC - Results frm RNAi screens
          Antibody Information
          Laboratory Generated Antibodies
           

          polyclonal

          Commercially Available Antibodies
           
          Cell Line Information
          Publicly Available Cell Lines
           
            Other Stable Cell Lines
             
              Other Comments

              RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.

              rut expression in the mushroom bodies of adult flies is both necessary and sufficient to correct the olfactory memory defect in rut flies - ruling out a requirement for rut expression during development of the mushroom bodies.

              The acute role for the rut-encoded type I adenyl cyclase is consistent with rut functioning as a molecular coincidence detector for the convergence of simultaneous signals (e.g. those from a conditioned and an unconditioned stimulus) on a neuron.

              Both Itp-r83A and rut signalling pathways are involved in regulating larval molting.

              Expression of rut in the median bundle appears to be sufficient to provide rut function in learning and memory as tested in a spatial learning paradigm with a heat punishment procedure.

              rut is required exclusively in the Kenyon cells of the mushroom bodies for a component of olfactory short-term memory.

              Activation of rut protein through heterotrimeric guanine nucleotide-binding protein-coupled receptor is regulated by Nf1.

              Subsets of dnc and rut neurons display abnormal spontaneous spikes and altered firing patterns in 'giant' neuron cultures. Abnormal spike activity and reduced K+ current remain in dnc rut double mutants suggesting that the opposite effects on cAMP metabolism by dnc and rut do not counterbalance the mutual functional defects. The aberrant spontaneous activity and altered frequency coding in different stimulus paradigms may present problems in the stability and reliability of neural circuits for information processing during certain behavioural tasks, raising the possibility of modulation in neuronal excitability as a cellular mechanisms underlying learning and memory.

              Nf1P2 eliminates the activation of the rut-encoded adenylyl cyclase by eliminating the pituitary-adenylyl-cyclase-activating polypeptide (PACAP38) response.

              Mutations of rut affect habituation of the electrically stimulated giant fibre response.

              The spatial expression of DopR2 coincides with that of rut, and possibly initiates biochemical cascades underlying learning.

              Phenotypic analysis reveals control of growth cone mobility requires optimal cAMP levels within an operational range.

              Injection of Acp70A into mutant virgin females elicits a small response in behaviour.

              The learning and memory mutant, rut, has impaired adenylyl cyclase activity.

              Synaptic current and modulation of K+ current triggered by Pacap38 are mediated by coactivation of the Ras/Raf (Ras85D/phl) and rut cyclase pathways.

              rut gene product is preferentially expressed in the mushroom bodies. Cell specific ablation of the mushroom bodies, by hydroxyurea, demonstrates they mediate associative odour learning in flies.

              A double mutant of an allele of rut and stnA7 is no more inviable than stnA7 alone.

              The rutabaga gene was cloned from a Ecol\lacZ enhancer trap-induced rut allele: wild type rut expression is elevated in mushroom bodies, suggesting that mushroom bodies are the principal sites mediating olfactory learning and memory.

              The open reading frame is homologous to a major portion of the mammalian adenylyl cyclases. Nucleotide sequence analysis of the open reading frame predicts the encoded protein is 2249 amino acids in length. The amino terminal half appears to share the same overall structure and hydropathy profile as the previously isolated mammalian adenylyl cyclases (Feinstein, 1991, in press, Gao, 1991, in press).

              rut plays a secondary role in the maternal regulation of embryonic cAMP content.

              rut mutant analysis suggests that the cAMP cascade plays a role in the shaping neuronal connectivity. The sensory neuron innervating the antero-notopleural bristle has an abnormally large number of side branches and varicosities in a defined segment of the axon. Ultrastructure studies suggest that the varicosities are potential synaptic sites.

              rut mutants are defective in a step of the cAMP cascade: they show impaired synaptic facilitation and post-tetanic potentiation as well as abnormal responses to direct application of dibutyryl cAMP. Results suggest that the cAMP cascade plays a role in synaptic facilitation and potentiation and indicate that synaptic plasticity is altered in memory mutants.

              Mutations in rut affect the sensory fatigue due to anteronotopleural bristle deflection, not sensory adaptation.

              Mutant analysis provides evidence for the participation of a G0-like protein in learning and memory.

              Mutations in rut significantly reduce the females song memory after prestimulation with courtship hums. This suggests a simple sensitization process may be involved with the female pulse song memory (Kyriacou and Hall, Nature 308: 62).

              Mutant males and homozygous females impaired in several types of learning and memory; associative conditioning defective in tests using either reward (Tempel, Bonini, Dawson and Quinn, 1983) or aversive unconditioned stimuli (e.g. Dudai, 1983; Dudai, Svi and Segel, 1984; Livingstone, Sziber and Quinn, 1984), including tests of 'classical' (e.g. Tully and Quinn, 1985) and 'operant' conditioning (Mariath, 1985); able to learn in associative conditioning tests involving visual cues, but at subnormal levels (Folkers, 1982) and memory appears to be normal. Learning scores subnormal when measured immediately after certain types of training; then either scores decay rapidly with time (Tempel, Bonini, Dawson and Quinn, 1983; Tully and Quinn, 1985) or there is no indication of memory (Mariath, 1985). Although defective in some aspects of learning, heterozygous females behave essentially normally in shock/odor tests (Dudai, Uzzan and Zvi, 1983). Courtship also defective; unlike wild-type males, rut males court inseminated and virgin females with equal vigor; they may be unable to distinguish them (Gailey, Jackson and Siegel, 1984). In tests of non-associative conditioning, rut shows aberrant habituation and sensitization to sugar stimuli (Duerr and Quinn, 1982); rut males subnormal in learning to avoid courtship of immature males; and homozygous or hemizygous rut females defective in 'priming' of mating behavior by prestimulations with artificial courtship songs; effects of such acoustical prestimulations decay more rapidly than normal (Kyriacou and Hall, 1984). In either the homozygous or heterozygous condition rut acts as a partial suppressor of the sterility of homozygous dnc females inversely related to degree of rescue, suggesting both a maternal and a zygotic role of rut (Bellen, Gregory, Olsson and Kiger, 1984; Bellen and Kiger, 1988). Double mutant females mated to Canton-S males lay many eggs, but most of the eggs fail to hatch. Biochemically, rut influences adenylate cyclase activity (Dudai, Svi and Segel, 1984; Livingstone, Dudai and Zvi, 1984); it seems to abolish a calcium or calmodulin stimulated component of adenylate cyclase activity (Livingstone, Dudai and Zvi, 1984), while leaving intact a component of activity stimulated by guanyl nucleotides, fluoride, or monoamines, suggesting that rut may directly affect the catalytic subunit of the adenylate cyclase complex (Livingstone, Dudai and Zvi, 1984; Dudai, Svi and Segel, 1984); consistent with this hypothesis is the observation that cyclase activity in rut is lower than normal, even in the presence of forskolin (Dudai, Svi and Segel, 1984; Dudai, Sher, Segal and Yovell, 1985). rut primarily affects total cyclase activity in the adult abdomen, with progressively milder effects on thoracic and head cyclase (Livingstone, Dudai and Zvi, 1984; Dudai and Svi, 1985); reduction of abdominal adenylate cyclase activity of rut1 > rut2 > rut3 (Bellen et al.); the majority of adenylate cyclase activity in wild type is in a particulate fraction and rut lacks up to 35% of total particulate activity (Dudai and Zvi, 1985). That rut may in fact encode a component of the fly's adenylate cyclase catalytic subunit is suggested by altered Km of enzyme activity in mutant flies (e.g. Dudai, Uzzan and Zvi, 1983; Dudai, Sher, Segal and Yovell 1985) and by the fact that hypoploidy of rut+ in females leads to approximately half normal levels of that cyclase activity specifically affected by the rut mutations (Livingstone et al.) and hyperploidy for the normal allele leads to increased activity (Livingstone). The biochemical results suggest that rut1 could be a null mutation.

              Relationship to Other Genes
              Source for database merge of

              Source for merge of: rut EP1603

              Additional comments

              "l(1)G0344" may affect "rut". "l(1)G0498" may affect "rut". "l(1)G0206" may affect "rut". "l(1)G0325" may affect "rut".

              Nomenclature History
              Source for database identify of

              Source for identity of: Adcy1 rut

              Nomenclature comments

              The original gene name "rutabaga" (rut) was changed to "Adenylate cyclase 1" (Adcy1) to reflect its homology to the human gene and eliminate the potentially offensive association of "vegetable" gene names with human mental disability.

              Etymology
              Synonyms and Secondary IDs (18)
              Reported As
              Symbol Synonym
              EP1603
              rut
              (Andreatta et al., 2025, Gao et al., 2025, Larnerd et al., 2025, Lee et al., 2025, Martinez-Cordera et al., 2025, Nöbel et al., 2025, Gil-Martí et al., 2024, Ismael et al., 2024, Jeong et al., 2024, Kakizawa et al., 2024, Peng et al., 2024, Sutton et al., 2024, Tener et al., 2024, Chan et al., 2023, Corthals et al., 2023, Guo et al., 2023, Li et al., 2023, Shaheen et al., 2023, Tu et al., 2023, Corrales et al., 2022, Sheardown et al., 2022, Zatsepina et al., 2022, Baker et al., 2021, Baltruschat et al., 2021, Li and Hidalgo, 2021, Melnattur et al., 2021, Park et al., 2021, Raun et al., 2021, Boto et al., 2020, Chodankar et al., 2020, Dissel, 2020, Dissel et al., 2020, Eschment et al., 2020, Funato, 2020, Kang et al., 2020, Lathen et al., 2020, Li et al., 2020, Lnenicka, 2020, Sears and Broadie, 2020, Watanabe et al., 2020, Williams-Simon et al., 2020, Zhao et al., 2020, Song et al., 2019, Stern et al., 2019, Thum and Gerber, 2019, Baggett et al., 2018, Gene Disruption Project members, 2018-, Louis et al., 2018, Miyashita et al., 2018, Widmer et al., 2018, Murakami et al., 2017, Park et al., 2017, Richlitzki et al., 2017, Ueno et al., 2017, Vonhoff and Keshishian, 2017, Murmu and Martin, 2016, Naganos et al., 2016, Pitmon et al., 2016, Saras and Tanouye, 2016, Scholz-Kornehl and Schwärzel, 2016, Schwartz et al., 2016, Androschuk et al., 2015, Del Pino et al., 2015, Dissel et al., 2015, Grotewiel and Bettinger, 2015, Ostrowski et al., 2015, Ueda and Wu, 2015, Zhang et al., 2015, Cressy et al., 2014, Del Pino et al., 2014, Xu et al., 2014, Zhang et al., 2014, Dubnau and Chiang, 2013, Ganguly and Lee, 2013, Ishimoto et al., 2013, Kwon et al., 2013, Neckameyer and Argue, 2013, Perisse et al., 2013, Robinson and Atkinson, 2013, Scheunemann et al., 2013, Terriente-Felix et al., 2013, Vilmos et al., 2013, Xie et al., 2013, Yoon et al., 2013, Zhang and Emery, 2013, Chen and Ganetzky, 2012, Japanese National Institute of Genetics, 2012.5.21, Kikuchi et al., 2012, Koon and Budnik, 2012, Paranjpe et al., 2012, Pezzulo et al., 2012, Rodriguez et al., 2012, Scheunemann et al., 2012, Sudhakaran et al., 2012, Tsai et al., 2012, Ueda and Wu, 2012, Wu et al., 2012, Arthaud et al., 2011, Brembs, 2011, Guan et al., 2011, Guo et al., 2011, Kang et al., 2011, Knapek et al., 2011, Koon et al., 2011, Trannoy et al., 2011, Gervasi et al., 2010, Jumbo-Lucioni et al., 2010, Knapek et al., 2010, Larkin et al., 2010, Shuai et al., 2010, Tan et al., 2010, Zars, 2010, Blum et al., 2009, Claridge-Chang et al., 2009, Donlea et al., 2009, Honjo and Furukubo-Tokunaga, 2009, Iijima-Ando et al., 2009, Koganezawa et al., 2009, Lebreton and Martin, 2009, Li et al., 2009, Liu et al., 2009, Pan et al., 2009, Ruedi and Hughes, 2009, Seugnet et al., 2009, Tomchik and Davis, 2009, Ueda and Wu, 2009, Anaka et al., 2008, Brembs and Plendl, 2008, Hong et al., 2008, Lee et al., 2008, Masek and Heisenberg, 2008, Mensch et al., 2008, Neuser et al., 2008, Shakiryanova and Levitan, 2008, Ueno and Kidokoro, 2008, Acevedo et al., 2007, Asztalos et al., 2007, Balling et al., 2007, Lu et al., 2007, Motosaka et al., 2007, Peng et al., 2007, Perisse et al., 2007, Thum et al., 2007, Tinette et al., 2007, Tong et al., 2007, van Swinderen, 2007, Xia and Tully, 2007, Yamazaki et al., 2007, Akalal et al., 2006, Chabaud et al., 2006, Diegelmann et al., 2006, Ferris et al., 2006, Ganguly-Fitzgerald et al., 2006, Guo and Zhong, 2006, Molnar et al., 2006, Blow et al., 2005, Haddrill et al., 2005, Honjo and Furukubo-Tokunaga, 2005, Yu et al., 2005, Baines, 2004, Cho et al., 2004, Davis, 2004, Gerber et al., 2004, Mee et al., 2004, Zhong and Wu, 2004, Aravamudan and Broadie, 2003, Devaud et al., 2003, Alshuaib and Mathew, 2002, Hall, 2002, Schwaerzel et al., 2002, Hendricks et al., 2001, Kamyshev et al., 2000, Barth and Heisenberg, 1997)
              Name Synonyms
              adenylyl cyclase
              rutabaga
              (McDonald et al., 2025, Shafer, 2025, Joyce et al., 2024, Davis, 2023, Metaxakis et al., 2023, Aso and Rubin, 2020, Bai and Suzuki, 2020, Karam et al., 2020, Kinser and Pincus, 2020, Sitaraman and LaFerriere, 2020, Chen et al., 2019, Song et al., 2019, Thum and Gerber, 2019, Lowenstein and Velazquez-Ulloa, 2018, Romey-Glüsing et al., 2018, Widmann et al., 2018, Murakami et al., 2017, Tomita et al., 2017, Vonhoff and Keshishian, 2017, Crocker et al., 2016, Pitmon et al., 2016, Davis, 2015, Dissel et al., 2015, Lee, 2015, Ueda and Wu, 2015, Singh et al., 2014, Wright, 2014, Dubnau and Chiang, 2013, Duvall and Taghert, 2013, Guichard et al., 2013, Neckameyer and Argue, 2013, Paulk et al., 2013, Perisse et al., 2013, Potdar and Sheeba, 2013, Scheunemann et al., 2013, Vilmos et al., 2013, Chen and Ganetzky, 2012, Duvall and Taghert, 2012, Morozova et al., 2012, Paranjpe et al., 2012, Tsai et al., 2012, Ueda and Wu, 2012, Chow et al., 2011, Guan et al., 2011, Guo et al., 2011, Knapek et al., 2011, Lawlor et al., 2011, Trannoy et al., 2011, Buchanan and Davis, 2010, Gervasi et al., 2010, Knapek et al., 2010, Knight et al., 2010, Larkin et al., 2010, Lee and Wu, 2010, Murakami et al., 2010, Qin and Dubnau, 2010, Tan et al., 2010, Blum et al., 2009, Claridge-Chang et al., 2009, Donlea et al., 2009, Honjo and Furukubo-Tokunaga, 2009, Iijima-Ando et al., 2009, Khurana et al., 2009, Koganezawa et al., 2009, Lebreton and Martin, 2009, Li et al., 2009, Liu et al., 2009, Ruedi and Hughes, 2009, Seugnet et al., 2009, Tomchik and Davis, 2009, Ueda and Wu, 2009, Anaka et al., 2008, Hong et al., 2008, Masek and Heisenberg, 2008, Neuser et al., 2008, Asztalos et al., 2007, Balling et al., 2007, Shadan, 2007, Tinette et al., 2007, Tong et al., 2007, van Swinderen, 2007, Xia and Tully, 2007, Yamazaki et al., 2007, Akalal et al., 2006, Diegelmann et al., 2006, Ferris et al., 2006, Katsov and Clandinin, 2006, Reaume and Sokolowski, 2006, Blow et al., 2005, Haddrill et al., 2005, Honjo and Furukubo-Tokunaga, 2005, Baines, 2004, Davis, 2004, Gerber et al., 2004, Mee et al., 2004, Tinette et al., 2004, Aravamudan and Broadie, 2003, Dubnau et al., 2003, Alshuaib and Mathew, 2002, Hall, 2002, Kitamoto, 2002, Zhang et al., 2002, Hendricks et al., 2001, Kamyshev et al., 2000, Barth and Heisenberg, 1997)
              Secondary FlyBase IDs
              • FBgn0044471
              Datasets (0)
              Study focus (0)
              Experimental Role
              Project
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              Title
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              Result
              Result Type
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              External Crossreferences and Linkouts ( 186 )
              Sequence Crossreferences
              NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
              GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
              RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
              UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
              UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
              UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
              Other crossreferences
              AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
              DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
              EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
              FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
              FlyMine - An integrated database for Drosophila genomics
              KEGG Genes - Molecular building blocks of life in the genomic space.
              MARRVEL_MODEL - MARRVEL (model organism gene)
              Linkouts
              BioGRID - A database of protein and genetic interactions.
              Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
              DroID - A comprehensive database of gene and protein interactions.
              DRSC - Results frm RNAi screens
              Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
              FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
              FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
              Flygut - An atlas of the Drosophila adult midgut
              FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.
              iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
              Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
              KEGG Metabolic Pathways - A collection of manually drawn metabolic pathway maps representing knowledge of molecular interaction, reaction and relation networks.
              KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.
              MIST (genetic) - An integrated Molecular Interaction Database
              MIST (protein-protein) - An integrated Molecular Interaction Database
              Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
              References (579)