FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\mle
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General Information
Symbol
Dmel\mle
Species
D. melanogaster
Name
maleless
Annotation Symbol
CG11680
Feature Type
FlyBase ID
FBgn0002774
Gene Model Status
Stock Availability
Enzyme Name (EC)
DNA helicase (3.6.4.12)
RNA helicase (3.6.4.13)
DNA 3'-5' helicase (5.6.2.4)
RNA 3'-5' helicase (5.6.2.6)
Gene Summary
maleless (mle) encodes a helicase and a member of the Male-Specific-Lethal dosage compensation complex, which increases male X chromosome transcription approximately two-fold. mle homozygous mutant males die as larvae, while females are viable. [Date last reviewed: 2019-03-14] (FlyBase Gene Snapshot)
Also Known As

nap, napts, male lethal, no action potential, no-action-potential

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
2-55
RefSeq locus
NT_033778 REGION:5974857..5980778
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (35 terms)
Molecular Function (15 terms)
Terms Based on Experimental Evidence (5 terms)
CV Term
Evidence
References
inferred from mutant phenotype
inferred from direct assay
inferred from direct assay
inferred from physical interaction with FLYBASE:lncRNA:roX2; FB:FBgn0019660
inferred from direct assay
inferred from direct assay
Terms Based on Predictions or Assertions (11 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN001053532
enables ATP binding
inferred from electronic annotation with InterPro:IPR011545, InterPro:IPR044447
inferred from biological aspect of ancestor with PANTHER:PTN001053532
inferred from sequence or structural similarity with UniProtKB:Q08211
inferred from sequence or structural similarity with UniProtKB:Q08211
inferred from sequence or structural similarity
inferred from sequence or structural similarity with UniProtKB:Q08211
inferred from electronic annotation with InterPro:IPR044445, InterPro:IPR044446
inferred from sequence or structural similarity
traceable author statement
inferred from electronic annotation with InterPro:IPR011545
enables RNA binding
inferred from biological aspect of ancestor with PANTHER:PTN008360424
inferred from biological aspect of ancestor with PANTHER:PTN001053532
Biological Process (10 terms)
Terms Based on Experimental Evidence (7 terms)
CV Term
Evidence
References
involved_in axon extension
inferred from mutant phenotype
inferred from mutant phenotype
inferred from direct assay
inferred from direct assay
inferred from mutant phenotype
inferred from direct assay
inferred from genetic interaction with FLYBASE:Su(var)3-7; FB:FBgn0003598
Terms Based on Predictions or Assertions (5 terms)
CV Term
Evidence
References
inferred from sequence or structural similarity with UniProtKB:Q08211
traceable author statement
non-traceable author statement
inferred from sequence or structural similarity with UniProtKB:Q08211
inferred from biological aspect of ancestor with PANTHER:PTN001053532
inferred from sequence or structural similarity with UniProtKB:Q08211
Cellular Component (10 terms)
Terms Based on Experimental Evidence (8 terms)
CV Term
Evidence
References
located_in chromatin
inferred from direct assay
located_in chromosome
inferred from direct assay
located_in cytosol
inferred from direct assay
part_of MSL complex
inferred from direct assay
inferred from direct assay
located_in nucleus
inferred from direct assay
located_in X chromosome
inferred from direct assay
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
is_active_in nucleolus
inferred from biological aspect of ancestor with PANTHER:PTN008360574
inferred from sequence or structural similarity with UniProtKB:Q08211
inferred from biological aspect of ancestor with PANTHER:PTN008360574
Protein Family (UniProt)
Belongs to the DEAD box helicase family. DEAH subfamily. (P24785)
Catalytic Activity (EC/Rhea)
RNA helicase activity
ATP + H2O = ADP + phosphate + H(+) (3.6.4.13)
3'-5' DNA helicase activity
Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction (5.6.2.4)
3'-5' RNA helicase activity
n ATP + n H2O + wound RNA = n ADP + n phosphate + unwound RNA (5.6.2.6)
DNA helicase activity
ATP + H2O = ADP + phosphate + H(+) (3.6.4.12)
ATP hydrolysis activity
RHEA 13065:
Summaries
Gene Snapshot
maleless (mle) encodes a helicase and a member of the Male-Specific-Lethal dosage compensation complex, which increases male X chromosome transcription approximately two-fold. mle homozygous mutant males die as larvae, while females are viable. [Date last reviewed: 2019-03-14]
Gene Group (FlyBase)
MALE SPECIFIC LETHAL COMPLEX -
The Male Specific Lethal (MSL) complex is a chromatin modifying complex composed of five protein subunits and two non-coding RNAs. MSL is involved in X chromosome dosage compensation in males. (Adapted from FBrf0228243).
DEAH-BOX RNA HELICASES -
DEAH-box RNA helicases belong to helicase superfamily 2 (SF2). They are characterized by the presence of nine conserved helicase motifs, including the DEAH sequence in motif II. (Adapted from PMID:21509200.)
UNCLASSIFIED DNA HELICASES -
This group comprises DNA helicases that do not classify under other groups in FlyBase.
Protein Function (UniProtKB)
RNA helicase component of the male-specific lethal (MSL) histone acetyltransferase complex, a multiprotein complex essential for elevating transcription of the single X chromosome in the male (X chromosome dosage compensation) (PubMed:1653648, PubMed:25158899, PubMed:26545078). Within the MSL complex, the helicase activity of mle remodels roX non-coding RNA (roX1 and roX2)s to promote assembly of the MSL complex (PubMed:23870142, PubMed:26545078, PubMed:30649456, PubMed:30805612). Able to unwind blunt-ended RNA duplexes and has specificity for uridine-rich nucleotides (PubMed:26545078).
(UniProt, P24785)
Phenotypic Description (Red Book; Lindsley and Zimm 1992)
mle: maleless
Homozygous males die, but homozygous females survive. Males produced by homozygous females die during the third larval instar, whereas those produced by heterozygous females are late pupal lethals. Females transformed into phenotypic males (tra) or intersexes (dsx) unaffected by mle, i.e. mle acts only upon single-X-bearing flies. No interaction with msl-1 or msl-2 (Belote, 1983, Genetics 96: 165-86). mle4 males surviving at 18 are sterile, small, and slow developing. Concluded to be defective in dosage compensation in males based on decreased levels of X-linked-enzyme activities (G6PD, 6GPD, FUM, β-HAD) but not autosomally encoded enzymes (ADH, AO, GPDH, IDH) in homozygous mle4 male larvae and escaping adults, e.g. β-HAD. The incorporation of labeled uridine by the polytene X chromosome relative to that of 2R is lower than normal in mle4 males (Belote and Lucchesi, 1980, Nature 285: 573-75); steady-rate level of Sgs4 mRNA incompletely compensated in mle4 and mle4/mle6 male larvae (Breen and Lucchesi, 1986, Genetics 112: 483-91). Polytene X chromosome of mle males appears narrower and more densely stained than that of control males. Few homozygous mle gynandromorphs survive; XO patches small, with small bristles, and mostly confined to abdomen (Uenoyama, Uchida, Fukunaga, and Oishi, 1982, Genetics 102: 223-31). mle pole cell transplanted into wild-type hosts incapable of undergoing normal spermatogenesis (Bachiller and Sanchez, 1986, Dev. Biol. 118: 379-84). Homozygous (and to a lesser extent heterozygous) mle females that are heterozygous for SxlF1 (Uenoyama, Fukunaga, and Oishi, 1982, Genetics 102: 233-43; Skripsky and Lucchesi, 1982, Dev. Biol. 94: 153-64) or are the surviving progeny raised at 17 of homozygous da mothers (Cline, 1982, Genetics 100: 641-63) develop as intersexes.
napts: no action potential (J.C. Hall; M. Kernan)
Larvae or adults become rapidly paralyzed when exposed to 37 and rapidly recover on return to lower temperatures. Rearing stocks chronically at room temperature or above causes napts to "adapt" such that higher temperatures (> 40) are required for paralysis (Kyriacou and Hall, 1985). Experiments involving one-time rearing at low temperature caused napts to paralyze at relatively low temperatures (Nelson and Wyman, 1990). Axonal conduction (but not synaptic transmission) fails in larvae at high temperatures (Wu et al., 1978; Wu and Ganetzky, 1980), but action potentials in the giant fiber (GF) pathway of adults are not blocked at temperatures up to 43 (Elkins and Ganetzky, 1990; Nelson and Wyman, 1990), though the latency from brain stimulation to response of thoracic muscles are aberrantly long, even at low temperatures (Nelson and Wyman, 1990), and this long-latency disappears as the temperature is raised to 35 (Elkins and Ganetzky, 1990). "Following frequency" of napts thoracic muscle responses (re. GF pathway stimulation) reduced at elevated temperatures, an effect which can be reversed by injection of 4-amino-pyridine (Nelson and Wyman, 1990). At permissive temperatures, refractory period for elicitation of a series of action potentials is abnormally long (Ganetzky and Wu, 1980); at these low temperatures, napts suppresses effects of "hyperexcitability" mutations such as Sh, bas, bss, eas, Hk, kdn, and tko (Ganetzky and Wu, 1982, Genetics 100: 597-614). napts is unconditionally lethal (Ganetzky and Wu, 1980) in a double mutant with parats1 (death occurring during 1st larval instar) and the viability of other para; napts combinations is poor (Ganetzky, 1984); two doses of para+ (in males) suppresses high-temperature paralysis of napts (Stern et al., 1990). In mosaic experiments, cuticular clones of parats1 in a napts background (after low-temperature development) have non-functioning sensory cells, probably due to lack of nerve conduction which, however, did not cause any anatomical abnormalities involving the central projections of these sensory neurons (Burg and Wu, 1986). Another developmental study, examining larval nerve terminal innervating body-wall muscles (Budnik et al., 1990), showed slight reduction in the extent of branching caused by napts at permissive temperature; the increase in branching (and higher than normal number of varicosities on motor-neurites) induced by an eag Sh double mutant was suppressed by napts (re. low-temperature rearing). napts in combination with tipE leads to poor viability at permissive temperature for both mutants (Ganetzky, 1986, J. Neurogenet. 3: 19-31; Jackson, Wilson, and Hall, 1986, J. Neurogenet. 3: 1-17). napts is, at permissive temperature, hypersensitive to blocking effects of tetrodotoxin (TTX) on action potentials (Ganetzky and Wu, 1980); brain membrane extracts of napts, assayed at low or high temperatures, have subnormal levels of tetrodotoxin (Kauvar, 1982) or saxitoxin (Jackson et al., 1984) binding activity; the latter study reports that there are no qualitative alterations of this binding activity (kd is normal). Cultured neurons from napts larvae are 4 to 5-fold more resistant than wild-type cells to killing effects of veratridine, irrespective of temperature (22 vs 35) (Suzuki and Wu 1984, J. Neurogenet. 1: 225-38), but TTX has no effects on these mutant cells, whose general growth characteristics are also normal (Wu, Suzuki and Poo, 1983, J. Neurosci. 3: 1888-99). The mutation does not seem to modify the expression of sodium currents in embryonic neurons (O'Dowd and Aldrich, 1988, J. Neurosci. 8: 3633-43). Exposure of napts males to high temperature causes arrest of oscillator underlying rhythmic component of courtship song (Kyriacou and Hall, 1985); in experiments on conditioned courtship, napts males learn normally but have shortened memory spans, and napts suppresses Sh-induced decrements in courtship learning (Cowan and Siegel, 1984, J. Neurogenet. 1: 333-44; 1986, J. Neurogenet. 3: 187-201).
Summary (Interactive Fly)

DEAH-box subfamily ATP-dependent helicase - Mle plays an early role in dosage compensations, perhaps in packaging roX2 RNA into growing dosage compensation protein complexes - remodels the roX lncRNAs, enabling the long noncoding RNA-mediated assembly of the dosage compensation complex

Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
2

Please see the JBrowse view of Dmel\mle for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry P24785)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
PDB - An information portal to biological macromolecular structures
Comments on Gene Model

Gene model reviewed during 5.47

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.48

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0086031
4062
1293
FBtr0100576
4023
936
Additional Transcript Data and Comments
Reported size (kB)

4.0 (northern blot)

Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
FBpp0085367
143.7
1293
7.23
FBpp0100031
104.1
936
7.15
Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments
Reported size (kDa)

1293, 226 (aa); 140 (kD observed); 144 (kD predicted)

Comments

The truncated form of mle protein is predicted

by one of the cDNAs. It has 198aa in common with the larger form of mle

and has 28 distinct amino acids at its carboxy terminus.

External Data
Subunit Structure (UniProtKB)

Component of the male-specific lethal (MSL) histone acetyltransferase complex, composed of mof, mle, msl-1, msl-2 and msl-3 proteins, as well as roX1 and roX2 non-coding RNAs (PubMed:10679323, PubMed:11014199, PubMed:23870142). Interacts with Unr; promoting association between mle and roX2 non-coding RNA (PubMed:25158899). Interacts with Top2 (PubMed:23989663).

(UniProt, P24785)
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\mle using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.65

Transcript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

mle transcripts are detected throughout development and are found in males and females.

mle transcripts are not sex-specific.

Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

mle protein is detected in nuclear extracts from adult males and females.

Strong anti-mle protein staining is observed at hundreds of sites along the length of the male X chromosome. Weak staining of the autosomes and the female X is also observed.

Marker for
 
Subcellular Localization
CV Term
Evidence
References
located_in chromatin
inferred from direct assay
located_in chromosome
inferred from direct assay
located_in cytosol
inferred from direct assay
part_of MSL complex
inferred from direct assay
inferred from direct assay
located_in nucleus
inferred from direct assay
located_in X chromosome
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\mle in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 39 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 27 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of mle
Transgenic constructs containing regulatory region of mle
Aberrations (Deficiencies and Duplications) ( 18 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
abdomen & macrochaeta
axon & motor neuron | conditional ts
neuromuscular junction & synapse | conditional ts
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (19)
14 of 14
Yes
Yes
4  
3 of 14
No
No
3 of 14
No
No
1  
3 of 14
No
No
3 of 14
No
No
1  
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (19)
13 of 14
Yes
Yes
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Mus musculus (laboratory mouse) (19)
13 of 14
Yes
Yes
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (19)
11 of 13
Yes
Yes
9 of 13
No
Yes
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
Yes
2 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
Yes
Danio rerio (Zebrafish) (17)
13 of 14
Yes
Yes
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (12)
14 of 14
Yes
Yes
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Anopheles gambiae (African malaria mosquito) (14)
11 of 12
Yes
Yes
3 of 12
No
No
Arabidopsis thaliana (thale-cress) (23)
5 of 13
Yes
No
5 of 13
Yes
No
5 of 13
Yes
No
5 of 13
Yes
No
5 of 13
Yes
No
4 of 13
No
No
4 of 13
No
No
4 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
Yes
2 of 13
No
No
2 of 13
No
No
2 of 13
No
Yes
2 of 13
No
No
2 of 13
No
No
2 of 13
No
Yes
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
1 of 13
No
No
Saccharomyces cerevisiae (Brewer's yeast) (7)
3 of 13
Yes
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
Schizosaccharomyces pombe (Fission yeast) (9)
3 of 12
Yes
No
3 of 12
Yes
No
2 of 12
No
No
2 of 12
No
No
2 of 12
No
No
2 of 12
No
No
2 of 12
No
No
2 of 12
No
No
1 of 12
No
No
Escherichia coli (enterobacterium) (2)
2 of 11
Yes
No
1 of 11
No
No
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:mle. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (13)
7 of 13
7 of 13
5 of 13
5 of 13
5 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
2 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 1 )
Allele
Disease
Evidence
References
Potential Models Based on Orthology ( 1 )
Modifiers Based on Experimental Evidence ( 1 )
Allele
Disease
Interaction
References
Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
Functional Complementation Data
Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
Interactions
Summary of Physical Interactions
Interaction Browsers

Please see the Physical Interaction reports below for full details
RNA-protein
Physical Interaction
Assay
References
protein-protein
Physical Interaction
Assay
References
Summary of Genetic Interactions
Interaction Browsers

Please look at the allele data for full details of the genetic interactions
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
External Data
Subunit Structure (UniProtKB)
Component of the male-specific lethal (MSL) histone acetyltransferase complex, composed of mof, mle, msl-1, msl-2 and msl-3 proteins, as well as roX1 and roX2 non-coding RNAs (PubMed:10679323, PubMed:11014199, PubMed:23870142). Interacts with Unr; promoting association between mle and roX2 non-coding RNA (PubMed:25158899). Interacts with Top2 (PubMed:23989663).
(UniProt, P24785 )
Linkouts
BioGRID - A database of protein and genetic interactions.
DroID - A comprehensive database of gene and protein interactions.
MIST (genetic) - An integrated Molecular Interaction Database
MIST (protein-protein) - An integrated Molecular Interaction Database
Pathways
Signaling Pathways (FlyBase)
Metabolic Pathways
FlyBase
External Links
External Data
Class of Gene
Genomic Location and Detailed Mapping Data
Chromosome (arm)
2R
Recombination map
2-55
Cytogenetic map
Sequence location
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
42A6-42A6
Limits computationally determined from genome sequence between P{PZ}l(2)0985109851&P{lacW}Src42Ak10108 and P{lacW}l(2)k09848k09848&P{EP}EP407
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
42A-42A
(determined by in situ hybridisation)
Experimentally Determined Recombination Data
Location
Left of (cM)
Notes

Maps just distal to ap based on deficiency mapping.

Stocks and Reagents
Stocks (12)
Genomic Clones (18)
 

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (18)
 

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced
BDGP DGC clones
Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    RNAi and Array Information
    Linkouts
    DRSC - Results frm RNAi screens
    Antibody Information
    Laboratory Generated Antibodies
    Commercially Available Antibodies
     
    Cell Line Information
    Publicly Available Cell Lines
     
      Other Stable Cell Lines
       
      Other Comments

      The mle protein interacts with the most prominent transcriptionally active regions of chromosomes independently of other MSL proteins.

      More than 80% of para transcripts in a mlenap-ts1 background are aberrant, owing to internal deletions that include the edited para exon.

      The mlenap-ts1 mutation results in the occurrence of a "splicing catastrophe" of the para transcript in the region of the RNA editing site.

      Gene products of the male specific lethal (msl) group of genes including msl-1, msl-2, msl-3, mle, and mof are associated with all female chromosomes at a low level but are sequestered to the X chromosome in males. There is evidence for the presence of nucleation sites for association of msl proteins with the X chromosome rather than individual gene binding sites.

      Gene products of the male specific lethal (msl) group of genes preferentially associate with the male X chromosome and may have a role in dosage compensation. This may be achieved by regulating an inverse dosage effect, which would be maintained on the male X and nullified on the autosomes.

      Used as a 'bait' in the yeast two-hybrid system to screen for interactors from an imaginal disc cDNA library: Dbp80 is identified.

      mof colocalises with the MSL complex on the X chromosome: a sequence of binding events results in the formation of the MSL complex on the X chromosome in males and in the targeting of mof to its presumed site of action. mle is necessary but only as a structural component for the recruitment of mof to the X chromosome.

      In the germline mle is not involved in chromosomal dosage compensation but may be involved in post-transcriptional gene regulation. Loss of mle has no detectable effect on expression or localisation of acetylated His4.

      mle has NTPase and both RNA and DNA helicase activities.

      The NTPase/helicase activities of mle are essential for dosage compensation.

      Loss of mle NTPase and helicase activities results in male lethality without elimination of the localisation of the mle-msl-1 complex to the male X chromosome.

      msl-2 and msl-1 colocalise to a reproducible subset of their wild-type X chromosome sites in the absence of either mle or msl-3.

      The roX1 gene is positively regulated by genes of the dosage compensation system such as mle.

      X chromosome proteins associated with dosage compensation in melanogaster are sufficiently conserved to allow significant antibody cross-reaction to D.simulans, D.virilis, D.americana.americana and D.pseudoobscura.pseudoobscura chromosomes. Cross reaction is also observed in the X chromosome and the X2 chromosome (2 copies in females and 1 in males) of D.miranda. These results provide evidence that the male-specific lethal proteins can be acquired on previously unrelated chromosome arms during evolution.

      Male-specific lethal (MSL) proteins accumulate in a subregion of male nuclei (the X chromosome) beginning at late blastoderm stage. X chromosomal binding of the MSLs is observed throughout embryonic and larval development in both diploid and polytene tissues. His4 colocalises with the MSLs in embryos. Binding of the MSLs is interdependent in diploid cells and is prevented in female embryonic cells by Sxl.

      Mutations in Khc enhance the para and mel and suppress the Sh and eag mutant phenotypes.

      Association of mle with the polytene X chromosome is RNase sensitive and mutations in the ATPase motifs affect mle function. The carboxyl terminus of mle may have a potential role in general affinity to RNA.

      The products of msl-1, msl-2, mle and msl-3 loci specifically associate with hundreds of sites along the X chromosome in males, but not in females. The binding of each of the four proteins requires the functional products from the other three. 2X3A individuals are mosaic for both Sxl expression and msl-1, msl-2, mle and msl-3 binding to the X chromosome, with a perfect inverse correlation at the cellular level between Sxl expression and msl-1, msl-2, mle and msl-3 X chromosome binding.

      Heartbeat of mlenap-ts1 individuals is seriously impaired, becoming arrhythmic at elevated temperatures.

      Immunostaining of embryonic and larval stages demonstrates that His4, msl-1 and msl-3 are associated with the male X chromosome as early as gastrulation, while mle binding is not detected until the late embryonic/late larval stages.

      The msl-3, mle and msl-1 gene products may associate with one another in a male-specific heteromeric complex on the X chromosome to achieve its hyperactivation.

      The expression pattern of mle suggests mle has a maternal component that appears at the beginning of embryogenesis and localises to the male X chromosome at stage 8.

      Elements needed for dosage compensation are localised to the X chromosome only after blastoderm and msl-dependent dosage compensation is not necessary during the first part of embryogenesis. This suggest the existance of an additional msl-independent dosage compensation mechanism; dosage compensation of run expression at blastoderm is not dependent on male specific lethal genes.

      The binding of mle, msl-1, msl-2 and His4 proteins to the X chromosome are interdependent from early embryogenesis.

      The msl-2 primary transcript may play a role in male specific binding of mle, msl-3 and msl-1 to the X chromosome.

      The gene products of mle, msl-1 bind to the male X chromosome in an identical pattern, and the binding sites of H4Ac16 acetylated form of the His4 product are largely coincident with the mle/msl-1 binding sites. Association of H4Ac16 protein with the male X chromosome requires wild type function of msl-1, msl-2, mle and msl-3.

      The four msl gene products interact to form a multiprotein complex.

      Antisera to mle protein label the euchromatic X chromosome through mitosis, but neither the X heterochromatin nor autosomes.

      msl-1, like mle and H4Ac16 (an acetylated form of the His4 product), exhibits a wild type male localisation pattern in Sxl- XX nuclei.

      In females, the Sxl product functions to prevent mle from binding to the two X chromosomes. The X chromosome binding of mle requires wild type msl-1, msl-2 and msl-3 functions.

      mle was identified by two very different mutant phenotypes, male-lethality ('mle') and rapid paralysis of larvae or adults when exposed to 37oC ('napts').

      The 'mle' group phenotype: Mutants are defective for dosage compensation in males. Homozygous males die, but homozygous females survive. Males produced by homozygous females die during the third larval instar, whereas those produced by heterozygous females are late pupal lethals. Females transformed into phenotypic males (tra1) or intersexes (dsx1) unaffected by mle1, i.e. mle acts only upon single-X-bearing flies. mle4 males surviving at 18oC are sterile, small and slow developing. Polytene X chromosome of mle1 males appears narrower and more densely stained than that of control males. The 'nap' group phenotype: Larvae or adults become rapidly paralyzed when exposed to 37oC and rapidly recover on return to lower temperatures.

      mle plays a direct role in dosage compensation of the X chromosome.

      Slight reduction in the extent of branching caused by mlenap-ts1 at permissive temperature; the increase in branching (and higher than normal number of varicosities on motor-neurites) induced by an eag Sh double mutant was suppressed by mlenap-ts1 (re. low-temperature rearing).

      Action potentials in the giant fiber (GF) pathway of adults are not blocked at temperatures up to 43oC. The long-latency phenotype disappears as the temperature is raised to 35oC.

      Experiments involving one-time rearing at low temperature caused mlenap-ts1 to paralyze at relatively low temperatures. Action potentials in the giant fiber (GF) pathway of adults are not blocked at temperatures up to 43oC, though the latency from brain stimulation to response of thoracic muscles are aberrantly long, even at low temperatures. 'Following frequency' of mlenap-ts1 thoracic muscle responses (re. GF pathway stimulation) is reduced at elevated temperatures, an effect which can be reversed by injection of 4-amino-pyridine.

      Two doses of para+ (in males) suppresses high-temperature paralysis of mlenap-ts1.

      Mutation does not seem to modify the expression of sodium currents in embryonic neurons.

      mle1 pole cell transplanted into wild-type hosts are incapable of undergoing normal spermatogenesis.

      Steady-rate level of Sgs4 mRNA incompletely compensated in mle4 and mle4/mle6 male larvae.

      In mosaic experiments, cuticular clones of parats1 in a mlenap-ts1 background (after low-temperature development) have non-functioning sensory cells, probably due to lack of nerve conduction which, however, did not cause any anatomical abnormalities involving the central projections of these sensory neurons.

      In experiments on conditioned courtship, mlenap-ts1 males learn normally but have shortened memory spans and mlenap-ts1 suppresses Sh-induced decrements in courtship learning.

      mlenap-ts1 in combination with tipE1 leads to poor viability at permissive temperature.

      Rearing stocks chronically at room temperature or above causes mlenap-ts1 to 'adapt' such that higher temperatures (> 40oC) are required for paralysis. Exposure of mlenap-ts1 males to high temperature causes arrest of oscillator underlying rhythmic component of courtship song.

      mle and para are involved in the function of sodium channels.

      Genetic, electrophysiological, behavioral and pharmacological studies of mlenap and para mutants suggest that they effect sodium channels.

      Brain membrane extracts of mlenap-ts1, assayed at low or high temperatures, have subnormal levels of saxitoxin, though there are no qualitative alterations of this binding activity (kD is normal).

      Cultured neurons from mlenap-ts1 larvae are 4 to 5-fold more resistant than wild-type cells to killing effects of veratridine, irrespective of temperature (22oC vs 35oC).

      Mutants show no interaction with msl-11 or msl-21.

      Cultured neurons from mlenap-ts1 larvae are not affected by TTX, their general growth characteristics are normal.

      Brain membrane extracts of mlenap-ts1, assayed at low or high temperatures, have subnormal levels of tetrodotoxin.

      Few homozygous mle1 gynandromorphs survive; X0 patches small, with small bristles, and mostly confined to abdomen.

      mle is involved in dosage compensation in males.

      Mutants show decreased levels of X-linked-enzyme activities (G6PD, 6GPD, FUM) but not autosomally encoded enzymes (ADH, AO, GPDH, IDH) in homozygous mle4 male larvae when compared with non-msl controls.

      The incorporation of labeled uridine by the polytene X chromosome relative to that of 2R is lower than normal in mle4 males.

      Axonal conduction (but not synaptic transmission) fails in mutant larvae at high temperatures. At permissive temperatures, refractory period for elicitation of a series of action potentials is abnormally long and mutants are hypersensitive to blocking effects of tetrodotoxin (TTX) on action potentials. mlenap-ts1 is unconditionally lethal in a double mutant with parats1 (death occurring during 1st larval instar).

      Axonal conduction (but not synaptic transmission) fails in larvae at high temperatures.

      Relationship to Other Genes
      Source for database merge of
      Additional comments

      The paralysis of 'nap' is not complemented by mle alleles.

      "mle" alleles fail to complement the paralysis caused by "nap" alleles, indicating that "nap" and "mle" are allelic.

      Molecular analysis demonstrated that "mle" mutants are allelic to "nap" mutants.

      Nomenclature History
      Source for database identify of

      Source for identity of: mle CG11680

      Nomenclature comments
      Etymology
      Synonyms and Secondary IDs (19)
      Reported As
      Symbol Synonym
      MLE
      (Choudhury et al., 2024, Tikhonova et al., 2024, Richards et al., 2022, Makki and Meller, 2021, Valsecchi et al., 2021, Müller et al., 2020, Ankush Jagtap et al., 2019, Bhardwaj et al., 2019, Lv et al., 2019, Nikolenko et al., 2019, Kim et al., 2018, Valsecchi et al., 2018, Ilik et al., 2017, Joshi and Meller, 2017, Schunter et al., 2017, Cugusi et al., 2016, Zee et al., 2016, Aradska et al., 2015, Cugusi et al., 2015, Keller and Akhtar, 2015, Lindehell et al., 2015, Lucchesi and Kuroda, 2015, Prabu et al., 2015, Vensko and Stone, 2015, Alekseyenko et al., 2014, Chen et al., 2014, Comoglio and Paro, 2014, Ferrari et al., 2014, Figueiredo et al., 2014, Ho et al., 2014, Lee et al., 2014, McElroy et al., 2014, Quinn et al., 2014, Zhimulev et al., 2014, Ilik et al., 2013, Dunlap et al., 2012, Hohl et al., 2012, Maenner et al., 2012, Villa et al., 2012, Georgiev et al., 2011, Roy et al., 2011, Stenberg and Larsson, 2011, Straub and Becker, 2011, Patalano et al., 2009, Izzo et al., 2008, Smith et al., 2008, Straub et al., 2008, Lucchesi et al., 2007, Mendjan and Akhtar, 2007, Morra et al., 2007, Park et al., 2007, Prasanth and Spector, 2007, Straub and Becker, 2007, Buscaino et al., 2006, Dahlsveen et al., 2006, Deng and Meller, 2006, Furuhashi et al., 2006, Gilfillan et al., 2006, Mendjan et al., 2006, Li et al., 2005, Nusinow and Panning, 2005, Kelley, 2004, Rattner and Meller, 2001, Kelley and Kuroda, 2000, Smith et al., 2000, Copps et al., 1998, Panning and Jaenisch, 1998, Franke and Baker, 1995, Gorman et al., 1995, Palmer et al., 1994)
      mak
      mle
      (Xie et al., 2025, Zolin et al., 2025, Ashniev et al., 2024, Lee et al., 2024, Wang et al., 2024, Jagtap et al., 2023, Jalloh et al., 2023, Titus et al., 2023, McCarthy et al., 2022, Ota et al., 2021, Pennemann et al., 2021, Valsecchi et al., 2021, Witt et al., 2021, Takai et al., 2020, Leatham-Jensen et al., 2019, Lv et al., 2019, Prayitno et al., 2019, Kim et al., 2018, Levis, 2018.8.30, Rennie et al., 2018, Valsecchi et al., 2018, Transgenic RNAi Project members, 2017-, Bhadra et al., 2016, Birchler, 2016, Erickson, 2016, Kuroda et al., 2016, Lee et al., 2016, Khan et al., 2015, Koya and Meller, 2015, Kroll et al., 2015, Lucchesi and Kuroda, 2015, Fagegaltier et al., 2014, Figueiredo et al., 2014, Militti et al., 2014, Ilik et al., 2013, Lim and Kelley, 2013, Wang et al., 2013, Bateman et al., 2012, Garber et al., 2012, Larschan et al., 2012, Birchler et al., 2011, Di Stefano et al., 2011, Friedman et al., 2011, Laverty et al., 2011, Leiserson and Keshishian, 2011, Morra et al., 2011, Napoletano et al., 2011, Barbash, 2010, Carrillo et al., 2010, Gladstein et al., 2010, Prabhakaran and Kelley, 2010, Worringer et al., 2009, Aratani et al., 2008, Carré et al., 2008, Doheny et al., 2008, Li et al., 2008, Morra et al., 2008, Pierre et al., 2008, Reenan and Rogina, 2008, Sandstrom, 2008, Spierer et al., 2008, Kind and Akhtar, 2007, Levine et al., 2007, Rodriguez et al., 2007, Song and Tanouye, 2007, Worringer and Panning, 2007, Deng and Meller, 2006, Lee and Wu, 2006, Schubeler, 2006, Gleason, 2005, Ray and Fox, 2005, Spierer et al., 2005, Feng et al., 2004, Zhimulev et al., 2003, Corona et al., 2002, Kuebler et al., 2001, Kuebler and Tanouye, 2000)
      mll
      Secondary FlyBase IDs
        Datasets (1)
        Study focus (1)
        Experimental Role
        Project
        Project Type
        Title
        • bait_protein
        Genome-wide localization of chromosomal proteins in cell lines by ChIP-chip and ChIP-Seq.
        Study result (0)
        Result
        Result Type
        Title
        External Crossreferences and Linkouts ( 67 )
        Sequence Crossreferences
        NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
        GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
        GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
        UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
        Other crossreferences
        AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
        DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
        EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
        FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
        FlyMine - An integrated database for Drosophila genomics
        KEGG Genes - Molecular building blocks of life in the genomic space.
        MARRVEL_MODEL - MARRVEL (model organism gene)
        PDB - An information portal to biological macromolecular structures
        Linkouts
        BioGRID - A database of protein and genetic interactions.
        Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
        DroID - A comprehensive database of gene and protein interactions.
        DRSC - Results frm RNAi screens
        Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
        Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
        Flygut - An atlas of the Drosophila adult midgut
        FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.
        iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
        Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
        MIST (genetic) - An integrated Molecular Interaction Database
        MIST (protein-protein) - An integrated Molecular Interaction Database
        References (445)