FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\Dr
Open Close
General Information
Symbol
Dmel\Dr
Species
D. melanogaster
Name
Drop
Annotation Symbol
CG1897
Feature Type
FlyBase ID
FBgn0000492
Gene Model Status
Stock Availability
Gene Summary
Drop (Dr) encodes a homeodomain transcription factor involved in patterning of the neuroectoderm and wing disc, specification of myoblasts and neuroblasts, proper development of muscle, neuronal and glial cells, male genital disc, and regulation of glucose metabolism. [Date last reviewed: 2019-03-07] (FlyBase Gene Snapshot)
Also Known As

msh, muscle segment homeobox, muscle specific homeobox, msh1, msh-1

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
3-99
RefSeq locus
NT_033777 REGION:29556386..29565244
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (24 terms)
Molecular Function (4 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
Biological Process (19 terms)
Terms Based on Experimental Evidence (9 terms)
CV Term
Evidence
References
involved_in brain development
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Terms Based on Predictions or Assertions (11 terms)
CV Term
Evidence
References
involved_in brain development
traceable author statement
non-traceable author statement
traceable author statement
inferred from biological aspect of ancestor with PANTHER:PTN000678062
traceable author statement
traceable author statement
non-traceable author statement
traceable author statement
non-traceable author statement
Cellular Component (1 term)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
located_in nucleus
inferred from direct assay
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
is_active_in nucleus
inferred from biological aspect of ancestor with PANTHER:PTN000678062
Protein Family (UniProt)
Belongs to the Msh homeobox family. (Q03372)
Summaries
Gene Snapshot
Drop (Dr) encodes a homeodomain transcription factor involved in patterning of the neuroectoderm and wing disc, specification of myoblasts and neuroblasts, proper development of muscle, neuronal and glial cells, male genital disc, and regulation of glucose metabolism. [Date last reviewed: 2019-03-07]
Gene Group (FlyBase)
NK-LIKE HOMEOBOX TRANSCRIPTION FACTORS -
NK-like (NKL) homeobox transcription factors are sequence-specific DNA binding proteins that regulate transcription. NKL transcription factors are homeobox genes closely related to Hox-like genes, a number of which are found in the NK cluster. Many of the NKL members contain an Engrailed Homology 1 (EH1) motif. (Adapted from FBrf0232555 and PMID:22094586).
Protein Function (UniProtKB)
Plays a key role in the specification of proneural and promuscular cluster formation (PubMed:8887329, PubMed:9486795). Required for the specification of dorsal and lateral muscle progenitor cells (PubMed:8887329, PubMed:9486795). Regulates development of peripheral nervous system derived from lateral neuroblasts (PubMed:28716930).
(UniProt, Q03372)
Phenotypic Description (Red Book; Lindsley and Zimm 1992)
Dr: Drop
Heterozygotes have extremely reduced numbers of facets, 1-10 in the case of Dr1 and DrA; ~30 facets coalesce to give shiny, dark red appearance in DrMio; five to seven rhabdomeres per ommatidium section; some rhabdomeres fuse. Developing eye disc reduced in size; morphogenetic furrow uneven; few clusters of presumptive photoreceptor cells; arrangement disturbed; microvillar caps blurred and diffuse(Renfranz and Benzer, 1989, Dev. Biol. 136: 411-29).
Summary (Interactive Fly)

transcription factor - homeodomain - confers cell fate on the dorsal (lateral-most) column of neuroblasts during ventral cord development - patterning of the wing disc, specification of myoblasts, proper development of muscle, neuronal and glial cells, male genital disc, and regulation of glucose metabolism

Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\Dr for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry Q03372)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
Comments on Gene Model

Gene model reviewed during 5.50

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0085441
2552
515
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
FBpp0084807
54.2
515
8.58
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)

437 (aa); 48 (kD predicted)

Comments
External Data
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Dr using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.95

Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
dorsal ectoderm anlage

Comment: anlage in statu nascendi

ventral ectoderm anlage

Comment: anlage in statu nascendi

antennal anlage in statu nascendi

Comment: reported as procephalic ectoderm anlage in statu nascendi

dorsal head epidermis anlage in statu nascendi

Comment: reported as procephalic ectoderm anlage in statu nascendi

visual anlage in statu nascendi

Comment: reported as procephalic ectoderm anlage in statu nascendi

antennal anlage

Comment: reported as procephalic ectoderm anlage

central brain anlage

Comment: reported as procephalic ectoderm anlage

dorsal head epidermis anlage

Comment: reported as procephalic ectoderm anlage

visual anlage

Comment: reported as procephalic ectoderm anlage

ventral nerve cord primordium

Comment: reported as ventral nerve cord anlage

northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

Neurectodermal expression of msh begins in embryonic stage 5 as discontinuous patches in several segments that later extend and merge to form stripes the length of the embryo. The msh-expression domain corresponds roughly to the dorsal half of the neurectoderm. From this region, 4 S1 neuroblasts of the lateral column delaminate and strong msh expression is seen in only one of these. This expression is transient and disappears by stage 9. At stage 10, expression is seen in many dorsal S3-S5 neuroblasts and in their putative neurectodermal proneural clusters. Expression is also seen in some of their immediate progeny. All are from the dorsal half of the neurogenic ectoderm but not all neuroblasts in this region express msh.

msh transcripts are detected at all stages tested except 0-2hr embryos on northern blots. The highest levels of expression are seen in embryos. A detailed description of the spatial pattern of expression in the embryo is given. In summary, expression is first observed at the cellular blastoderm stage in the lateral ectoderm and evolves into a pattern of eight stripes. The lateral expression prefigures the appearance of lateral proneural clusters of the CNS. During the first wave of neuroblast segregation, expression is restricted to delaminating neuroblasts (1 in 4 lateral neuroblasts per hemisegment express msh) and is excluded from ectodermal cells. Subsequent waves of neuroblast segregation are also preceded by msh expression in cell clusters in the the lateral neurectoderm. msh is also expressed in sensory organ precursors of the PNS. Three additional sites of msh in the embryonic ectoderm include the precursors to the stomatogastric neurons, the region that will give rise to neurons of the brain and optic lobes, and the salivary gland placodes. msh expression is seen in dorsal mesodermal cells that will give rise to dorsal body wall muscles and ventral-lateral mesodermal cells that will give rise to fat body. In wing discs, msh is expressed in a highly restricted pattern. Highest expression occurs in three patches of cells in the prospective dorsal hinge region, two of which include proneural clusters. Areas of weaker expression include a row of cells that will develop into sensilla of the anterior wing margin.

msh transcripts are detected at all stages tested except third instar larvae on northern blots. A peak of expression occurs in 8-12hr embryos. By in situ hybridization, transcripts are first detected at stage 5 of embryogenesis in a bilateral series of segmentally repeated bands of dorsal lateral ectodermal cells. At around stage 8, this is replaced with a transient ventral lateral band of msh expression extending along most of the germ band. In stage 10, expression is seen in segmentally repeated clusters of neuroblasts in the thoracic and abdominal segments. By stage 12, in addition to strong expression in segregated neuroblasts, expression is seen in clusters of mesodermal cells. By stage 13, expression is primarily in the CNS and in the developing somatic musculature (corresponding mostly to the developing dorsal and lateral somatic body wall muscles). Expression is also seen in the foregut, hindgut, and fat body.

Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

Dr protein is expressed in the male genital discs of third instar larvae. Expression is localized to a medial domain on the ventral surface of the A9 primordium encompassing the bnl-expressing cells but extending laterally and posteriorly; and (2) a subset of the btl-expressing cells that are adjacent to those expressing bnl.

At embryonic stage 15, Dr expression is seen in specific cell clusters in each brain neuromere. Protcerebral Dr expression begins at stage 12 and continues through embryogenesis. A domain of expression is observed in the deutocerebrum consisting of about 30 cells, which are mainly located near and within the protocerbral-deuterocerebral boundary. Another expression domain is located in the tritocerebrum distributed along the entire neuromere. Dr expression is also observed in cells closely associated with the preoral commissure and cervical as well as longitudinal axon tracts. Expression is also observed in specific cell clusters at the mediolateral margin of each individual neuromere in the posterior brain and ventral nerve cord. Expression is also observed in cell bodies associated with the paired longitudinal connectives, resembling longitudinal glial cells.

Expression in procephalic neuroblasts stage 9-11: tritocerebrum - d4-8; deuterocerebrum - d2-13

Marker for
Subcellular Localization
CV Term
Evidence
References
located_in nucleus
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Dr in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 4-6
  • Stages(s) 7-8
  • Stages(s) 9-10
  • Stages(s) 11-12
  • Stages(s) 13-16
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 56 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 18 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Dr
Transgenic constructs containing regulatory region of Dr
Aberrations (Deficiencies and Duplications) ( 11 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (133)
10 of 14
Yes
Yes
9 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
Yes
1 of 14
No
No
2  
1 of 14
No
Yes
1 of 14
No
Yes
1 of 14
No
Yes
1 of 14
No
Yes
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
2  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
2  
1 of 14
No
No
1  
1 of 14
No
No
1  
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
2  
1 of 14
No
No
0  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
3  
1 of 14
No
No
1  
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1  
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (67)
9 of 14
Yes
Yes
9 of 14
Yes
Yes
9 of 14
Yes
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Mus musculus (laboratory mouse) (78)
10 of 14
Yes
Yes
0  
9 of 14
No
Yes
9 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
0  
1 of 14
No
No
2  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
3  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
0  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
5  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (107)
7 of 13
Yes
Yes
7 of 13
Yes
Yes
2 of 13
No
No
2 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
Danio rerio (Zebrafish) (106)
9 of 14
Yes
Yes
9 of 14
Yes
Yes
9 of 14
Yes
Yes
9 of 14
Yes
Yes
8 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (46)
8 of 14
Yes
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
Yes
2 of 14
No
No
2 of 14
No
Yes
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
0  
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1  
Anopheles gambiae (African malaria mosquito) (53)
10 of 12
Yes
Yes
2 of 12
No
No
1 of 12
No
No
Arabidopsis thaliana (thale-cress) (15)
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
1 of 13
Yes
No
Saccharomyces cerevisiae (Brewer's yeast) (2)
1 of 13
Yes
No
1 of 13
Yes
No
Schizosaccharomyces pombe (Fission yeast) (1)
1 of 12
Yes
No
Escherichia coli (enterobacterium) (0)
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:Dr. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (81)
5 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
4 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
3 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
2 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 6 )
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    Summary of Genetic Interactions
    Interaction Browsers

    Please look at the allele data for full details of the genetic interactions
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Linkouts
    BioGRID - A database of protein and genetic interactions.
    DroID - A comprehensive database of gene and protein interactions.
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    FlyBase
    External Links
    External Data
    Linkouts
    Class of Gene
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    3R
    Recombination map
    3-99
    Cytogenetic map
    Sequence location
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    99B3-99B3
    Limits computationally determined from genome sequence between P{PZ}l(3)0674306743 and P{PZ}ncd05884
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    99B1-99B2
    (determined by in situ hybridisation)
    99B-99B
    (determined by in situ hybridisation)
    Experimentally Determined Recombination Data
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (221)
    Genomic Clones (19)
    cDNA Clones (15)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
    Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      Antibody Information
      Laboratory Generated Antibodies
       
      Commercially Available Antibodies
       
      Cell Line Information
      Publicly Available Cell Lines
       
        Other Stable Cell Lines
         
          Other Comments

          Cross-repressive interactions between the "identity genes" lbe, lbl, Dr and eve are essential for the specification of cardiac and muscular fates in the developing embryo.

          Dr is both necessary and sufficient to confer dorsal fate in wing development and acts downstream of ap.

          The Dr mutants are cis-regulatory alleles of stg, as well as alleles of Dr.

          "Dr" mutants are always double hits in two genes, one of which is "stg".

          Dr is expressed in the dorsal and lateral domains of muscle progenitors and is required for the specification of the progenitor cells. Ectopic expression of Dr in the entire mesoderm inhibits the proper development of the normally Dr-negative muscle progenitors in the dorsolateral domain. Results suggest Dr plays a role in regional specification of muscle progenitors/founders.

          Ectopic expression of Dr in the entire neuroectoderm severely disrupts the development of the midline and ventral neuroblasts.

          Dr is required for the correct development of dorsal neuroblasts in the embryo.

          Expression of Dr in the neuroectoderm prefigures the formation of proneural clusters. Dr expression also prefigures invagination centres of the stomatogastric nervous system. Dr is regulated by the dorsoventral patterning genes Egfr and dpp in early embryos. Ectodermal and mesodermal Dr expression depend on wg and hh.

          Normal expression and the effects of ectopic expression of Dr gene suggest a role in differentiation and patterning of embryonic muscles.

          Genetic analysis of the Dr locus suggests it defines a novel regulator of stg.

          Genetic analysis of ethyl methanesulfonate (EMS) and irradiation induced revertants reveal that the Dr mutations define two loci: Dr, defined by Dr1 and DrMio and Wedge, defined by Wedge1. Interactions between Dr revertant alleles and stg demonstrate they are separate loci.

          Dr has a role during embryogenesis. Clonal analysis of lethal revertant alleles suggest Dr has a role in eye development, required by the developing photoreceptor cells.

          The Dr homeobox sequence has been used as a probe to isolate a homologous mouse gene, called Hox-7.

          The DNA sequences of the homeobox region of 11 Drosophila genes, including Dr, have been compared.

          Heterozygotes have extremely reduced numbers of facets, 1-10 in the case of Dr1 and DrA; about 30 facets coalesce to give shiny, dark red appearance in DrMio; five to seven rhabdomeres per ommatidium section; some rhabdomeres fuse. Developing eye disc reduced in size; morphogenetic furrow uneven; few clusters of presumptive photoreceptor cells; arrangement disturbed; microvillar caps blurred and diffuse (Renfranz and Benzer, 1989).

          Relationship to Other Genes
          Source for database merge of

          Source for merge of: ltt msh

          Source for merge of: Dr msh

          Additional comments

          "Dlw" mutations may be regulatory mutants of the Dr gene; "Dr" gain-of-function mutants contain lesions in the same region as "Dlw" mutants (several kb upstream of the transcription start site), DrΔ68 is lethal in combination with Dlw1, Dlw3 or Dlw4 and the level of Dr mRNA is reduced throughout the wing pouch in Dlw1 mutants (which may account for the loss of function characteristics seen in homozygous Dlw1 mutant clones).

          Nomenclature History
          Source for database identify of

          Source for identity of: msh CG1897

          Nomenclature comments
          Etymology

          'Lottchen' is the name of twins in the book 'Das doppelte Lottchen' by Erich Kaestner.

          Synonyms and Secondary IDs (22)
          Reported As
          Symbol Synonym
          l(3)FA30
          ltt
          msh
          (Posnien et al., 2023, Xue et al., 2023, Junion and Jagla, 2022, Bridi et al., 2020, Otsuki and Brand, 2020, Lacin et al., 2019, Otsuki and Brand, 2019, Steinmetz et al., 2019, Li et al., 2017, Lusk et al., 2017, Reichert, 2017, Jussen et al., 2016, Levario et al., 2016, Urbach et al., 2016, Bier and De Robertis, 2015, Chen et al., 2015, Kim et al., 2015, Esteves et al., 2014, Jussen and Urbach, 2014, Ibrahim et al., 2013, Busser et al., 2012, Yamamoto et al., 2012, Lynch and Roth, 2011, Moses et al., 2011, Becam et al., 2010, Müller et al., 2010, Seibert and Urbach, 2010, Seibert et al., 2009, Von Ohlen and Moses, 2009, Von Ohlen et al., 2009, Becam and Milán, 2008, Kim et al., 2008, Liu et al., 2008, Seibert et al., 2008, Bonds et al., 2007, de Navascués and Modolell, 2007, Seibert et al., 2007, Sprecher et al., 2007, Urbach, 2007, Von Ohlen et al., 2007, Zhao et al., 2007, Cande et al., 2006, Chanut, 2006, Maurange et al., 2006, Mizutani et al., 2006, Sprecher and Hirth, 2006, Urbach et al., 2006, Levine and Davidson, 2005, Mizutani et al., 2005, Pueyo and Couso, 2005, Ramos and Robert, 2005, Sprecher et al., 2005, Stathopoulos and Levine, 2005, Villa-Cuesta and Modolell, 2005, Kosman et al., 2004, Urbach and Technau, 2004, Villa-Cuesta and Modolell, 2004, Cowden and Levine, 2003, Koizumi et al., 2003, Mizutani et al., 2003, Skeath and Thor, 2003, Urbach and Technau, 2003, Bruno and Abdelhay, 2002, Buescher et al., 2002, Edenfeld et al., 2002, Jagla et al., 2002, Oh et al., 2002, Stathopoulos and Levine, 2002, Ashraf and Ip, 2001, Milan et al., 2001, Popovici et al., 2001, Weiss et al., 2001, Cornell and Von Ohlen, 2000, Coulier et al., 2000, Jurata et al., 2000, Lu et al., 2000, Scott, 2000, von Ohlen and Doe, 2000, Arendt and Nubler-Jung, 1999, Chan and Jan, 1999, Chitnis, 1999, Frasch, 1999, Galliot et al., 1999, Hughes and Salinas, 1999, Jagla et al., 1999, Jazwinska et al., 1999, Paululat et al., 1999, Skeath, 1999, Doe et al., 1998, Kerszberg and Changeux, 1998, McDonald et al., 1998, Nose et al., 1998, Olson and Klein, 1998, Siddiqi, 1998, Udolph et al., 1998, Weiss et al., 1998, Yagi et al., 1998, Yin and Frasch, 1998, Bier, 1997, Buescher and Chia, 1997, Isshiki et al., 1997, D'Alessio and Frasch, 1996, Buescher and Chia, 1995, Davidson, 1995, Lord et al., 1995, Lord et al., 1995, Gehring et al., 1994, Jagla et al., 1993, Walldorf and Gehring, 1992, Walldorf et al., 1992, Holland, 1991, Tokunaga-Furukubo et al., 1991, Walldorf et al., 1991, Bodmer et al., 1990, Dohrmann et al., 1990, Robert et al., 1989)
          Secondary FlyBase IDs
          • FBgn0002849
          • FBgn0015510
          • FBgn0020528
          Datasets (0)
          Study focus (0)
          Experimental Role
          Project
          Project Type
          Title
          Study result (0)
          Result
          Result Type
          Title
          External Crossreferences and Linkouts ( 46 )
          Sequence Crossreferences
          NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
          GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
          GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
          UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
          Other crossreferences
          AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
          BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
          DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
          EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
          FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
          FlyMine - An integrated database for Drosophila genomics
          KEGG Genes - Molecular building blocks of life in the genomic space.
          MARRVEL_MODEL - MARRVEL (model organism gene)
          Linkouts
          BioGRID - A database of protein and genetic interactions.
          Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
          DroID - A comprehensive database of gene and protein interactions.
          DRSC - Results frm RNAi screens
          Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
          FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
          FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
          Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
          Flygut - An atlas of the Drosophila adult midgut
          iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
          Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
          MIST (protein-protein) - An integrated Molecular Interaction Database
          References (297)