FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: cancer, models of chromosomal instability
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General Information
Name
cancer, models of chromosomal instability
FlyBase ID
FBhh0000763
Disease Ontology Term
Parent Disease
OMIM
Overview

Aneuploidy is a common characteristic of cancer genomes and accelerates the development of anticancer drug resistance. Chromosomal instability (CIN) refers to the ongoing acquisition of genomic alterations that can involve either a gain or loss of whole chromosomes or structural aberrations, ranging from point mutations to small-scale genomic alterations and gross chromosomal rearrangements. CIN can be induced by defects that result in elevated DNA damage, weakened cell cycle checkpoints, or an aberrant mitotic spindle. Several models of CIN in Drosophila have been developed, using genes that affect these processes. Work in Drosophila is part of a growing effort to target CIN or to exploit downstream effects of CIN as therapeutic targets.

The most widely used Drosophila model targets the Dmel\mad2 gene, a conserved component of the spindle assembly checkpoint. RNAi-effected reduction in mad2 expression results in shortened mitoses and gives less time to correct any chromosome misorientation at metaphase II, resulting in a significantly higher rate of chromosome segregation errors. Other genes used to induce CIN include BubR1 (kinase with roles in spindle assembly checkpoint signalling and other aspects of mitosis and meiosis), Bub3 (also functions in the spindle assembly checkpoint (SAC) pathway), Rbf (several functions that impact genome stability), vtd (aka rad21, subunit of the cohesin complex), cmet (centrosome-associated kinesin-like motor protein), Kmn1 (component of a kinetochore complex), pnut (filament-forming cytoskeletal GTPase required for cytokinesis), Mps1 (a conserved protein kinase associated with kinetochores and required for the mitotic and meiotic spindle assembly checkpoints).

In the Drosophila mad2 model, CIN results in oxidative stress in aneuploid cells. Work exploiting this difference between normal and CIN cells resulted in identification of phosphoenolpyruvate carboxykinase (PEPCK) as a potential target. Proliferating CIN cells are shown to be vulnerable to inhibition of PEPCK (via RNAi or biochemical inhibitors), or its metabolic network, presumably because of their compromised redox status.

Several studies have made use of knockdown of the Bub3 gene combined with expression of BacA\p35, an inhibitor of apoptosis.

Cytokinesis failure, induced by RNAi directed against pnut, in combination with overexpression of the Hippo signaling pathway gene yki has been shown to result in neoplastic tumors. Using targeted expression in the wing, it has been demonstrated that cleavage defects trigger the activation of the JNK pathway, which leads to apoptosis, and that yki inhibits this tumor-suppressive role of JNK.

Reduced levels of pyridoxal 5'-phosphate (PLP, the active form of vitamin B6), induced by mutations in genes involved in PLP synthesis or by PLP inhibitors, have been shown to cause DNA damage and subsequent loss of heterozygosity. In a sensitive genotype (heterozygous for wts mutation) PLP inhibitors have been shown to induce the development of epithelial tumors. See also the human disease model report 'pyridoxamine 5'-phosphate oxidase deficiency' (FBhh0001037).

[updated Jun. 2022 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: cancer, models of chromosomal instability
OMIM report
Human gene(s) implicated
Symptoms and phenotype

Aberrant chromosomal architecture is one of the most common characteristics of cancer genomes. Chromosomal instability (CIN) accelerates the development of anticancer drug resistance. Identifying novel strategies to modulate CIN and to exploit the fitness cost associated with aneuploidy in cancer are critical aspects of cancer research and treatment (Sansregret, et al., 2018; pubmed:29297505).

Chromosomal instability (CIN) refers to the ongoing acquisition of genomic alterations that can involve either a gain or loss of whole chromosomes (W-CIN) or structural aberrations (S-CIN), which range from point mutations to small-scale genomic alterations and gross chromosomal rearrangements (Sansregret, et al., 2018; pubmed:29297505).

Chromosomal instability (CIN) refers to cell divisions that cannot maintain chromosomal integrity or number. This can be caused by defects including elevated DNA damage, weakened cell cycle checkpoints or an aberrant mitotic spindle (FBrf0236682 and references cited therein).

Genetics
Cellular phenotype and pathology
Molecular information
External links
    Disease synonyms
    Ortholog Information
    Human gene(s) in FlyBase
      Other mammalian ortholog(s) used
        D. melanogaster Gene Information (9)
        Gene Snapshot
        mad2 (mad2) encodes a conserved component of the spindle checkpoint. During mitosis, it is recruited to unattached kinetochores, where it binds the products of Mad1 and fzy, promoting the assembly of the mitotic checkpoint complex. During interphase, the product of mad2 is intranuclear, bound to the product of Mad1, and associated primarily with the nuclear pore complex. [Date last reviewed: 2019-03-14]
        Molecular function (GO)
        Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human MAD2L1 (1 Drosophila to 1 human). Dmel\mad2 shares 46% identity and 71% similarity with the human gene.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          Bub1-related kinase (BubR1) encodes a motif-rich protein with a C-terminal serine-threonine kinase domain. During prometaphase and metaphase, it plays important roles in spindle assembly checkpoint signalling, stabilization of kinetochore-microtuble attachments and chromosome alignment. It is also essential to maintain sister-chromatid cohesion during meiotic progression and for normal maintenance of Synaptonemal Complex in females. [Date last reviewed: 2019-03-07]
          Molecular function (GO)
          Cellular component (GO)
          Gene Groups / Pathways
          Comments on ortholog(s)

          Moderate-scoring ortholog of human BUB1 and BUB1B (2 Drosophila to 2 human). Dmel\BubR1 shares 21-22% identity and 34-35% similarity with the human genes.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          Retinoblastoma-family protein (Rbf) encodes a protein that binds to members of the E2F transcription factors and forms the DREAM complex, which regulates genes with diverse biological functions including cell cycle regulators, apoptosis regulators, and DNA replication/repair factors. The product of Rbf can also bind chromosomal proteins and modulate genome stability. It is negatively regulated by CycE-Cdk2 and CycD-Cdk4 cyclin-dependent kinase complexes. [Date last reviewed: 2019-03-14]
          Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human RBL1 and RBL2 (multiple homologous genes in both species). Dmel\Rbf shares 25-27% identity and 40-43% similarity with the human genes.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          verthandi (vtd) encodes a subunit of the cohesin complex, which encircles sister chromatids after DNA replication and has multiple roles in the regulation of gene expression and DNA repair. [Date last reviewed: 2019-03-21]
          Molecular function (GO)
          Gene Groups / Pathways
          Comments on ortholog(s)

          Moderate- to high-scoring ortholog of human RAD21 and RAD21L1 (1 Drosophila to 2 human; additional low-scoring orthologs in human). Dmel\vtd shares 34-39% identity and 48-51% similarity with the human genes.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          CENP-meta (cmet) encodes a kinetochore kinesin that contributes to metaphase chromosome alignment. [Date last reviewed: 2019-06-27]
          Cellular component (GO)
          Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human CENPE (2 Drosophila to 1 human; additional low-scoring orthologs in both species). Dmel\cmet shares 25% identity and 43% similarity with the human CENPE gene.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          Bub3 (Bub3) encodes a protein that functions in the spindle assembly checkpoint (SAC) pathway. This mitotic checkpoint pathway inhibits the APC/C complex and hence the transition from metaphase to anaphase, as long as there are free kinetochores that are not yet attached to the mitotic spindle in the cell. The product of Bub3 is localized at the kinetochore during mitosis with maximal levels observed at free kinetochores. Together with other SAC proteins it forms mitotic checkpoint complexes that bind and inhibit the APC/C. [Date last reviewed: 2019-03-07]
          Molecular function (GO)
          Gene Groups / Pathways
            Comments on ortholog(s)

            High-scoring ortholog of human BUB3 (1 Drosophila to 1 human). Dmel\Bub3 shares 60% identity and 76% similarity with the human gene.

            Orthologs and Alignments from DRSC
            DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
            Gene Snapshot
            rough deal (rod) encodes the major subunit of the Rod-Zw10-Zwilch (RZZ) complex. RZZ is an essential component of the outer kinetochore during mitosis. RZZ helps monitor and correct kinetochore-microtubule attachments during prometaphase, and consequently it regulates mitotic progression. [Date last reviewed: 2019-03-14]
            Molecular function (GO)
            Gene Groups / Pathways
            Comments on ortholog(s)

            Moderate-scoring ortholog of human KNTC1 (1 Drosophila to 1 human). Dmel\rod shares 20% identity and 38% similarity with the human gene.

            Orthologs and Alignments from DRSC
            DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
            Gene Snapshot
            peanut (pnut) encodes a protein that belongs to the septin family of polymerizing GTPases. Together with the products of Septin1 and Septin2, it forms the septin complex. It participates in cytokinesis and other processes that involve organization of the cell cortex. [Date last reviewed: 2019-03-14]
            Gene Groups / Pathways
            Comments on ortholog(s)

            High-scoring ortholog of human SEPT7 (1 Drosophila to 1 human); multiple other homologous genes in both species. Dmel\pnut shares 60% identity and 74% similarity with the human gene.

            Orthologs and Alignments from DRSC
            DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
            Gene Snapshot
            kinetochore Mis12-Ndc80 network component 1 (Kmn1) encodes a protein involved in the movement of chromosomes during mitosis. [Date last reviewed: 2019-09-19]
            Molecular function (GO)
              Gene Groups / Pathways
              Comments on ortholog(s)

              No gene orthologous to Dmel\Kmn1 has been identifed in human; appears to be confined to Diptera.

              Orthologs and Alignments from DRSC
              DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
              Other Genes Used: Viral, Bacterial, Synthetic (0)
                Summary of Physical Interactions (131 groups)
                protein-protein
                Interacting group
                Assay
                References
                anti bait coimmunoprecipitation, western blot
                anti bait coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, peptide massfingerprinting, western blot, experimental knowledge based, Identification by mass spectrometry
                anti bait coimmunoprecipitation, western blot
                experimental knowledge based
                protein-protein
                Interacting group
                Assay
                References
                anti tag coimmunoprecipitation, anti tag western blot
                experimental knowledge based
                anti tag coimmunoprecipitation, anti tag western blot
                experimental knowledge based
                anti bait coimmunoprecipitation, western blot
                phenotype-based detection assay, fluorescence microscopy, inferred by author
                proximity-dependent biotin identification, western blot
                anti bait coimmunoprecipitation, western blot, pull down, anti tag western blot
                pull down, Identification by mass spectrometry, anti bait coimmunoprecipitation, western blot
                anti bait coimmunoprecipitation, western blot
                anti bait coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, peptide massfingerprinting
                protein-protein
                Interacting group
                Assay
                References
                anti bait coimmunoprecipitation, western blot, coimmunoprecipitation, anti tag coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, western blot
                anti bait coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based, anti bait coimmunoprecipitation, western blot, coimmunoprecipitation, anti tag western blot
                pull down, autoradiography, anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation, western blot, two hybrid, coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
                anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting, experimental knowledge based, anti bait coimmunoprecipitation, western blot, pull down, autoradiography
                anti bait coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, western blot
                anti bait coimmunoprecipitation, western blot, Identification by mass spectrometry, affinity chromatography technology
                anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, anti tag western blot
                anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation, western blot
                pull down, western blot
                anti tag coimmunoprecipitation, anti tag western blot, pull down, western blot, fluorescent resonance energy transfer, fluorescence microscopy
                anti tag coimmunoprecipitation, western blot, multidimensional protein identification technology, anti bait coimmunoprecipitation
                anti tag coimmunoprecipitation, western blot, anti bait coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation
                protein-protein
                Interacting group
                Assay
                References
                anti bait coimmunoprecipitation, Identification by mass spectrometry, anti tag coimmunoprecipitation
                anti tag coimmunoprecipitation, Identification by mass spectrometry
                ion exchange chromatography, peptide massfingerprinting
                anti tag coimmunoprecipitation, anti tag western blot, autoradiography, western blot
                pull down, Identification by mass spectrometry
                pull down, molecular weight estimation by staining, Identification by mass spectrometry
                anti tag coimmunoprecipitation, western blot, Identification by mass spectrometry
                anti bait coimmunoprecipitation, Identification by mass spectrometry
                anti bait coimmunoprecipitation, anti tag western blot
                anti bait coimmunoprecipitation, Identification by mass spectrometry, anti tag coimmunoprecipitation
                pull down, western blot
                anti tag coimmunoprecipitation, anti tag western blot, two hybrid, pull down, western blot, anti bait coimmunoprecipitation
                pull down, autoradiography, anti bait coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, Identification by mass spectrometry
                pull down, peptide massfingerprinting, anti tag coimmunoprecipitation, western blot, anti bait coimmunoprecipitation
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, Identification by mass spectrometry, anti bait coimmunoprecipitation
                anti tag coimmunoprecipitation, Identification by mass spectrometry, anti bait coimmunoprecipitation, western blot, anti tag western blot
                acetylase assay, autoradiography
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, Identification by mass spectrometry
                anti bait coimmunoprecipitation, Identification by mass spectrometry, anti tag coimmunoprecipitation, anti tag western blot, western blot
                anti tag coimmunoprecipitation, western blot, Identification by mass spectrometry, anti bait coimmunoprecipitation
                anti tag coimmunoprecipitation, peptide massfingerprinting
                pull down, western blot
                anti tag coimmunoprecipitation, anti tag western blot
                anti bait coimmunoprecipitation, western blot
                protein-protein
                Interacting group
                Assay
                References
                experimental knowledge based
                anti bait coimmunoprecipitation, western blot
                experimental knowledge based
                experimental knowledge based
                experimental knowledge based
                anti tag coimmunoprecipitation, peptide massfingerprinting
                experimental knowledge based
                experimental knowledge based
                experimental knowledge based
                experimental knowledge based
                experimental knowledge based
                experimental knowledge based
                experimental knowledge based
                experimental knowledge based
                anti bait coimmunoprecipitation, peptide massfingerprinting
                anti bait coimmunoprecipitation, peptide massfingerprinting
                protein-protein
                Interacting group
                Assay
                References
                anti tag coimmunoprecipitation, western blot, anti tag western blot
                anti tag coimmunoprecipitation, anti tag western blot
                anti tag coimmunoprecipitation, peptide massfingerprinting
                anti tag coimmunoprecipitation, peptide massfingerprinting
                pull down, anti tag western blot
                protein-protein
                Interacting group
                Assay
                References
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, western blot, peptide massfingerprinting
                anti tag coimmunoprecipitation, peptide massfingerprinting
                anti tag coimmunoprecipitation, peptide massfingerprinting
                pull down, anti tag western blot, peptide massfingerprinting
                anti tag coimmunoprecipitation, peptide massfingerprinting
                anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting, molecular sieving, comigration in non denaturing gel electrophoresis, molecular weight estimation by staining
                anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting, comigration in non denaturing gel electrophoresis, molecular weight estimation by staining
                protein-protein
                Interacting group
                Assay
                References
                anti bait coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, peptide massfingerprinting
                anti bait coimmunoprecipitation, western blot
                experimental knowledge based
                transmission electron microscopy, pull down, autoradiography, two hybrid, anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation, western blot
                anti tag coimmunoprecipitation, anti tag western blot
                pull down, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting
                anti tag coimmunoprecipitation, western blot, anti bait coimmunoprecipitation, autoradiography, pull down, peptide massfingerprinting, molecular weight estimation by staining, experimental knowledge based, molecular sieving, anti tag western blot, cosedimentation
                anti tag coimmunoprecipitation, western blot, experimental knowledge based, two hybrid, anti bait coimmunoprecipitation, cosedimentation, molecular weight estimation by staining, anti tag western blot, molecular sieving, pull down, peptide massfingerprinting, autoradiography
                anti bait coimmunoprecipitation, anti tag western blot
                anti bait coimmunoprecipitation, anti tag western blot, experimental knowledge based
                anti tag coimmunoprecipitation, anti tag western blot
                RNA-RNA
                Interacting group
                Assay
                References
                protein-protein
                Interacting group
                Assay
                References
                protein cross-linking with a bifunctional reagent, peptide massfingerprinting, anti bait coimmunoprecipitation, molecular sieving, cosedimentation, molecular weight estimation by staining, anti tag coimmunoprecipitation
                anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
                anti bait coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based, two hybrid, anti tag coimmunoprecipitation, pull down, molecular sieving, mass spectrometry study of hydrogen/deuterium exchange, cosedimentation, molecular weight estimation by staining, protein cross-linking with a bifunctional reagent
                anti tag coimmunoprecipitation, peptide massfingerprinting
                protein cross-linking with a bifunctional reagent, peptide massfingerprinting, two hybrid, pull down, anti tag western blot, anti tag coimmunoprecipitation, anti bait coimmunoprecipitation, molecular sieving, cosedimentation, molecular weight estimation by staining, mass spectrometry study of hydrogen/deuterium exchange, experimental knowledge based
                molecular sieving, cosedimentation, molecular weight estimation by staining, pull down, anti tag western blot, protein cross-linking with a bifunctional reagent, peptide massfingerprinting
                anti tag coimmunoprecipitation, peptide massfingerprinting
                anti tag coimmunoprecipitation, peptide massfingerprinting
                two hybrid, molecular sieving, cosedimentation, molecular weight estimation by staining
                Alleles Reported to Model Human Disease (Disease Ontology) (23 alleles)
                Models Based on Experimental Evidence ( 4 )
                Modifiers Based on Experimental Evidence ( 3 )
                Allele
                Disease
                Interaction
                References
                model of  cancer
                is exacerbated by NGD14477
                is exacerbated by RafUAS.F179
                Models Based on Experimental Evidence ( 0 )
                Allele
                Disease
                Evidence
                References
                Modifiers Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Interaction
                References
                Models Based on Experimental Evidence ( 4 )
                Modifiers Based on Experimental Evidence ( 5 )
                Allele
                Disease
                Interaction
                References
                model of  cancer
                is ameliorated by psidin55D4
                is ameliorated by psidin85D1
                is ameliorated by psidinAE
                is ameliorated by psidinCJ
                model of  cancer
                Models Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Evidence
                References
                Modifiers Based on Experimental Evidence ( 0 )
                Allele
                Disease
                Interaction
                References
                Models Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Evidence
                References
                Modifiers Based on Experimental Evidence ( 0 )
                Allele
                Disease
                Interaction
                References
                Models Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Evidence
                References
                Modifiers Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Interaction
                References
                Models Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Evidence
                References
                Modifiers Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Interaction
                References
                Models Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Evidence
                References
                Modifiers Based on Experimental Evidence ( 4 )
                Models Based on Experimental Evidence ( 1 )
                Allele
                Disease
                Evidence
                References
                Modifiers Based on Experimental Evidence ( 0 )
                Allele
                Disease
                Interaction
                References
                Alleles Representing Disease-Implicated Variants
                Genetic Tools, Stocks and Reagents
                Sources of Stocks
                Contact lab of origin for a reagent not available from a public stock center.
                Bloomington Stock Center Disease Page
                Related mammalian, viral, bacterial, or synthetic transgenes
                Allele
                Transgene
                Publicly Available Stocks
                Selected Drosophila transgenes
                Allele
                Transgene
                Publicly Available Stocks
                RNAi constructs available
                Allele
                Transgene
                Publicly Available Stocks
                Selected Drosophila classical alleles
                Allele
                Allele class
                Mutagen
                Publicly Available Stocks
                amorphic allele - genetic evidence
                Delta2-3 transposase
                loss of function allele
                P-element activity
                amorphic allele - molecular evidence
                P-element activity
                P-element activity
                loss of function allele
                Delta2-3 transposase
                amorphic allele - genetic evidence
                Delta2-3 transposase
                amorphic allele - molecular evidence
                P-element activity
                References (47)