FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: cancer, epithelial, RAS models, role of autophagy
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General Information
Name
cancer, epithelial, RAS models, role of autophagy
FlyBase ID
FBhh0001033
Disease Ontology Term
Parent Disease
OMIM
Overview

The constitutively active Drosophila RAS mutation Ras85DV12 is analogous to oncogenic mutations found in human RAS proteins. Several studies in flies have addressed questions concerning the role of autophagy in RAS-driven tumorigenesis. See the human disease model report 'cancer, multiple, RAS-related' (FBhh0000474) for additional information concerning Ras85DV12 cancer models.

A genetic screen for loss-of-function mutations that enhance a hyperplastic phenotype of Ras85DV12 identified multiple genes involved in the autophagy pathway, including Atg8a (ortholog of human GABARAP and GABARAPL1) and Atg9 (ortholog of human ATG9A and ATG9B), Atg1 (ortholog of human ULK1 and ULK2). In subsequent experiments, knockdown of almost all tested genes involved in the autophagy pathway enhanced Ras85DV12-induced overgrowth, including nSyb (ortholog of human VAMP2, VAMP1, and VAMP3).

Results in flies were extended to a human system. Using available RNAseq data from The Cancer Genome Atlas, expression of autophagy genes was assessed for human pancreatic ductal adenocarcinoma (PAAD), since incidence of KRAS-activating mutations in this tumor type is very high. The analysis showed that lower expression of several core autophagy genes, including GABARAP and VAMP2, correlates with oncogenic KRAS mutations and poor prognosis in this pancreatic cancer.

In work using multiple different cancer models in flies (including RAS-driven and NOTCH-driven) to assess alterations in autophagy, different results were obtained in different systems. It was concluded that differing influences of autophagy on cell and tissue growth may depend on both oncogenic signal and cell type.

[updated May 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: cancer, epithelial, RAS models, role of autophagy
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information
External links
    Disease synonyms
    Search term: neoplastic phenotype(s)
    Ortholog Information
    Human gene(s) in FlyBase
      Other mammalian ortholog(s) used
        D. melanogaster Gene Information (5)
        Gene Snapshot
        Autophagy-related 8a (Atg8a) encodes a ubiquitin-like protein that is conjugated to phosphatidylethanolamine, and this lipid modification anchors it into the membrane of forming and completed autophagosomes. Atg8a product has roles in autophagosome formation, maintaining neuromuscular function and normal lifespan. [Date last reviewed: 2019-03-07]
        Gene Groups / Pathways
        Comments on ortholog(s)

        High-scoring ortholog of human GABARAP and GABARAPL1; multiple similar orthologs in both species.

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Gene Snapshot
        Autophagy-related 9 (Atg9) encodes an integral membrane protein acting as a membrane carrier for forming autophagosomes. It regulates TOR and JNK signaling pathways via autophagy. [Date last reviewed: 2019-07-11]
        Molecular function (GO)
        Gene Groups / Pathways
        Comments on ortholog(s)

        High-scoring ortholog of human ATG9A and ATG9B (1 Drosophila to 2 human).

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Gene Snapshot
        Autophagy-related 1 (Atg1) encodes a protein kinase that functions downstream of the product of mTor in the regulation of autophagy. [Date last reviewed: 2019-03-07]
        Gene Groups / Pathways
        Comments on ortholog(s)

        High-scoring ortholog of human ULK1 and ULK2; multiple similar orthologs in both species.

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Gene Snapshot
        neuronal Synaptobrevin (nSyb) encodes a SNAP receptor involved in vesicle fusion. [Date last reviewed: 2019-07-11]
        Gene Groups / Pathways
        Comments on ortholog(s)

        High-scoring ortholog of human VAMP2, VAMP1 and VAMP3; multiple similar orthologs in both species.

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Gene Snapshot
        Ras oncogene at 85D (Ras85D) encodes a protein that acts downstream of several cell signals, most notably from Receptor Tyrosine Kinases, to regulate tissue growth and development. When abnormally activated it can direct developmental defects and tissue hyperplasia, mimicking aspects of human disease including Rasopathies and cancer, respectively. [Date last reviewed: 2019-03-14]
        Cellular component (GO)
        Gene Groups / Pathways
        Comments on ortholog(s)

        High-scoring ortholog of human genes KRAS, HRAS, and NRAS (many to many; multiple paralogs and orthologs in both species). Dmel\Ras85D shares 78-86% identity and 86-92% similarity with KRAS, HRAS, and NRAS; for these three human genes, Ras85D is the highest-scoring ortholog in Drosophila.

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Other Genes Used: Viral, Bacterial, Synthetic (0)
          Summary of Physical Interactions (94 groups)
          RNA-protein
          Interacting group
          Assay
          References
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          protein-protein
          Interacting group
          Assay
          References
          anti bait coimmunoprecipitation, western blot, pull down, autoradiography
          pull down, autoradiography
          experimental knowledge based
          pull down, anti tag western blot
          experimental knowledge based
          pull down, western blot
          anti tag coimmunoprecipitation, anti tag western blot, two hybrid
          two hybrid, pull down, anti tag western blot, anti tag coimmunoprecipitation
          anti tag coimmunoprecipitation, anti tag western blot
          pull down, molecular weight estimation by staining
          pull down, autoradiography
          anti tag coimmunoprecipitation, anti tag western blot, pull down, autoradiography
          pull down, anti tag western blot
          proximity ligation assay, fluorescence microscopy
          experimental knowledge based
          anti tag coimmunoprecipitation, western blot
          pull down, autoradiography, proximity ligation assay, fluorescence microscopy, anti tag coimmunoprecipitation, anti tag western blot, western blot
          pull down, anti tag western blot
          pull down, autoradiography
          pull down, autoradiography
          pull down, anti tag western blot, anti tag coimmunoprecipitation
          experimental knowledge based
          pull down, anti tag western blot
          two hybrid, pull down, anti tag western blot
          anti tag coimmunoprecipitation, western blot
          pull down, anti tag western blot, two hybrid
          pull down, anti tag western blot
          pull down, autoradiography
          pull down, autoradiography
          protein-protein
          Interacting group
          Assay
          References
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot
          experimental knowledge based
          pull down, anti tag western blot, anti tag coimmunoprecipitation, western blot, two hybrid
          proximity-dependent biotin identification, anti tag western blot
          anti tag coimmunoprecipitation, western blot
          anti tag coimmunoprecipitation, anti tag western blot
          pull down, western blot, anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot
          anti bait coimmunoprecipitation, anti tag western blot, anti tag coimmunoprecipitation, western blot, pull down
          RNA-protein
          Interacting group
          Assay
          References
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr, pull down, western blot
          protein-protein
          Interacting group
          Assay
          References
          enzymatic study, autoradiography
          pull down, autoradiography
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot, western blot
          anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation, western blot
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation, western blot
          anti tag coimmunoprecipitation, anti tag western blot
          enzymatic study, autoradiography
          anti tag coimmunoprecipitation, anti tag western blot
          enzymatic study, autoradiography, pull down, western blot, anti tag coimmunoprecipitation, anti tag western blot
          pull down, western blot, anti tag coimmunoprecipitation
          pull down, autoradiography
          RNA-protein
          Interacting group
          Assay
          References
          protein-protein
          Interacting group
          Assay
          References
          anti tag coimmunoprecipitation, western blot
          anti tag coimmunoprecipitation, western blot
          comigration in sds page, western blot, experimental knowledge based
          phenotype-based detection assay, inferred by author, comigration in sds page, western blot
          experimental knowledge based
          phenotype-based detection assay, inferred by author
          phenotype-based detection assay, inferred by author
          phenotype-based detection assay, inferred by author, experimental knowledge based, anti bait coimmunoprecipitation, western blot, comigration in sds page
          protein-protein
          Interacting group
          Assay
          References
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          pull down, anti tag western blot
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          two hybrid, anti tag coimmunoprecipitation, autoradiography
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          gtpase assay, autoradiography
          anti tag coimmunoprecipitation, peptide massfingerprinting
          pull down, western blot, two hybrid
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, anti tag western blot, two hybrid, pull down
          pull down, anti tag western blot
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, anti tag western blot
          pull down, covalent binding, western blot, anti tag coimmunoprecipitation, Identification by mass spectrometry
          Alleles Reported to Model Human Disease (Disease Ontology) (53 alleles)
          Models Based on Experimental Evidence ( 1 )
          Allele
          Disease
          Evidence
          References
          Modifiers Based on Experimental Evidence ( 10 )
          Allele
          Disease
          Interaction
          References
          Models Based on Experimental Evidence ( 2 )
          Allele
          Disease
          Evidence
          References
          Modifiers Based on Experimental Evidence ( 4 )
          Models Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Evidence
          References
          Modifiers Based on Experimental Evidence ( 12 )
          Allele
          Disease
          Interaction
          References
          Models Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Evidence
          References
          Modifiers Based on Experimental Evidence ( 1 )
          Allele
          Disease
          Interaction
          References
          Models Based on Experimental Evidence ( 17 )
          Allele
          Disease
          Evidence
          References
          model of  cancer
          Modifiers Based on Experimental Evidence ( 19 )
          Allele
          Disease
          Interaction
          References
          model of  cancer
          is exacerbated by ITPUAS.F
          model of  cancer
          is ameliorated by InRGL00139
          is ameliorated by InRJF01183
          is ameliorated by InRJF01482
          is ameliorated by NetBΔ
          is ameliorated by NetBKK103672
          is ameliorated by unc-5MI04273
          is ameliorated by TimpUAS.cPa
          is ameliorated by JraNIG.2275R
          is ameliorated by bskDN.UAS
          is ameliorated by bskHMS00777
          is exacerbated by hepAct.UAS
          is exacerbated by imdUAS.cGa
          ameliorates  cancer
          model of  kidney cancer
          is ameliorated by Pka-C1B3
          is ameliorated by mTorΔP
          model of  cancer
          is exacerbated by Ptp61FΔ
          is exacerbated by exe1
          is exacerbated by M6W186stop
          is ameliorated by Ptip3804
          is exacerbated by p53UAS.cUa
          is ameliorated by Ilp8MI00727
          is exacerbated by Clbn1Q
          exacerbates  carcinoma
          model of  carcinoma
          is exacerbated by NkapGD11807
          Alleles Representing Disease-Implicated Variants
          Genetic Tools, Stocks and Reagents
          Sources of Stocks
          Contact lab of origin for a reagent not available from a public stock center.
          Bloomington Stock Center Disease Page
          Related mammalian, viral, bacterial, or synthetic transgenes
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila transgenes
          Allele
          Transgene
          Publicly Available Stocks
          RNAi constructs available
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila classical alleles
          Allele
          Allele class
          Mutagen
          Publicly Available Stocks
          amorphic allele - molecular evidence
          phiC31 integrase
          loss of function allele
          CRISPR/Cas9
          P-element activity
          loss of function allele
          loss of function allele
          P-element activity
          amorphic allele - genetic evidence
          amorphic allele - molecular evidence
          ends-out gene targeting
          amorphic allele - molecular evidence
          CRISPR/Cas9
          loss of function allele
          P-element activity
          loss of function allele
          Delta2-3 transposase
          loss of function allele
          Delta2-3 transposase
          References (12)